Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_P11
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 216 1e-57
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 191 6e-50
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 186 2e-48
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 183 2e-47
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 169 3e-43
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 144 6e-36
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 119 2e-28
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 119 3e-28
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 106 2e-24
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 26 2.7
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 26 2.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 4.7
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 6.3
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 25 8.3
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 216 bits (528), Expect = 1e-57
Identities = 99/134 (73%), Positives = 121/134 (90%)
Frame = +1
Query: 19 VACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREAMS 198
+ACTQPRRVAAMSVA+RVA+EMDV LG++VGY+IRFEDCSGP T+LKYMTDGMLLREAM+
Sbjct: 125 IACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMT 184
Query: 199 DPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNA 378
D ML +Y I+LDEAHERTLATDILMG++K + +R DLK+++MSATLDA KFQ+YF +A
Sbjct: 185 DHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDA 244
Query: 379 PLMNIPGRTHPVEI 420
PL+ +PGRT+PVEI
Sbjct: 245 PLLAVPGRTYPVEI 258
Score = 44.0 bits (99), Expect = 1e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +3
Query: 420 FYTPQPERDYLEAAIRTVSQIHVCE 494
+YT +PERDYLEAA+RTV QIHV E
Sbjct: 259 YYTQEPERDYLEAALRTVLQIHVEE 283
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 191 bits (465), Expect = 6e-50
Identities = 87/139 (62%), Positives = 114/139 (82%)
Frame = +1
Query: 4 RGSKGVACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLL 183
+G+K + CTQPRRVAAMSVA RVA+EMDV LGQ+VGYSIRFE+ + +TV+KY+TDGMLL
Sbjct: 462 KGNKKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLL 521
Query: 184 REAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQ 363
RE +++P L Y VI++DEAHERTL TDIL G++K++ + R DLK++I SAT+DA KF
Sbjct: 522 REFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSA 581
Query: 364 YFDNAPLMNIPGRTHPVEI 420
YFD AP+ +PGR +PV+I
Sbjct: 582 YFDEAPVFYVPGRRYPVDI 600
Score = 38.3 bits (85), Expect = 6e-04
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3
Query: 420 FYTPQPERDYLEAAIRTVSQIHVCE 494
+YTPQPE +Y++AAI T+ QIH +
Sbjct: 601 YYTPQPEANYIQAAITTILQIHTTQ 625
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 186 bits (452), Expect = 2e-48
Identities = 85/134 (63%), Positives = 110/134 (82%)
Frame = +1
Query: 19 VACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREAMS 198
+ CTQPRRVAAMSVA+RV+EEM V LG VGYSIRFED +GP TV+KYMTDG+LLRE++
Sbjct: 540 IGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLM 599
Query: 199 DPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNA 378
LE+Y VI++DEAHER+L TDILMG+LK+V+ +R D+KL++ SAT+++ KF +F A
Sbjct: 600 QNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGA 659
Query: 379 PLMNIPGRTHPVEI 420
P IPGRT+PV+I
Sbjct: 660 PQFTIPGRTYPVDI 673
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 423 YTPQPERDYLEAAIRTVSQIHVCE 494
+ P DY+EAA+R V QIH+ +
Sbjct: 675 FAKAPCSDYVEAAVRQVLQIHLSQ 698
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 183 bits (445), Expect = 2e-47
Identities = 84/137 (61%), Positives = 108/137 (78%)
Frame = +1
Query: 10 SKGVACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLRE 189
SK + CTQPRRVAAMSVA+RVAEE+ +G++VGY+IRFED + T +KYMTDGML RE
Sbjct: 556 SKMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRE 615
Query: 190 AMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYF 369
+ DP+L +Y VI+LDEAHERT+ATD+L G+LK + +R DLKL++ SATLDA +F YF
Sbjct: 616 CLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSYF 675
Query: 370 DNAPLMNIPGRTHPVEI 420
P+ IPGR++PVEI
Sbjct: 676 YKCPIFTIPGRSYPVEI 692
Score = 38.3 bits (85), Expect = 6e-04
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3
Query: 423 YTPQPERDYLEAAIRTVSQIHVCE 494
YT QPE DYL+AA+ TV QIH+ E
Sbjct: 694 YTKQPEADYLDAALMTVMQIHLSE 717
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 169 bits (410), Expect = 3e-43
Identities = 77/134 (57%), Positives = 108/134 (80%)
Frame = +1
Query: 19 VACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREAMS 198
VA TQPRRVAA+++A+RVA E LG+QVGYSIRF+D + +T +KY+TDGMLLRE ++
Sbjct: 144 VAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELIN 203
Query: 199 DPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNA 378
DP+L QY ++LDEAHERTL TD+L+G +K++IK+R L+++IMSATL+A +F ++FD A
Sbjct: 204 DPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGA 263
Query: 379 PLMNIPGRTHPVEI 420
+ I GR +PV+I
Sbjct: 264 EICYISGRQYPVQI 277
Score = 31.9 bits (69), Expect = 0.055
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 423 YTPQPERDYLEAAIRTVSQIH 485
YT PE DYL+A +RT+ Q+H
Sbjct: 279 YTYTPEPDYLDACLRTIFQLH 299
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 144 bits (349), Expect = 6e-36
Identities = 66/135 (48%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Frame = +1
Query: 19 VACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREAMS 198
+ CTQPRR+ A SV++RV+ E++ G GYSI+F+ +T +KYMTDG+LL E
Sbjct: 74 IGCTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFF 133
Query: 199 DPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYF--D 372
DP+LE+Y +++LDE HERTL+TD+L+GVLK ++++R+D +LV+ SA++DA K Q+F D
Sbjct: 134 DPLLERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQD 193
Query: 373 NAPLMNIPGRTHPVE 417
M+I G+ PVE
Sbjct: 194 KVCTMSIEGKLFPVE 208
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 119 bits (287), Expect = 2e-28
Identities = 57/135 (42%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
Frame = +1
Query: 19 VACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREAMS 198
V CTQPRR++A+S+A+RVA E D +G++VGYS+ E +T+L++ T G+LLR
Sbjct: 629 VVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLEFCTTGLLLRRIQQ 688
Query: 199 DPM--LEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFD 372
+ L +++DE HER++ DIL+ +LK VI + +LK+++MSAT+++ F+ YF
Sbjct: 689 HGLGFLSTLSCVVVDEVHERSIENDILLTLLKLVISRIPNLKVILMSATVNSDTFKYYFG 748
Query: 373 NAPLMNIPGRTHPVE 417
NA ++I GRT P++
Sbjct: 749 NAGHLHIHGRTFPIK 763
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 119 bits (286), Expect = 3e-28
Identities = 66/155 (42%), Positives = 95/155 (61%), Gaps = 14/155 (9%)
Frame = +1
Query: 19 VACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREAMS 198
+A TQPRRVAA+S+A+RV+EE+ +V Y IRF+ P T +K+MTDG+LLRE S
Sbjct: 451 IAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRELSS 509
Query: 199 DPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSD----------LKLVIMSATLDA 348
D +L Y +++DEAHER++ TDIL+G+L +++ R + LKL+IMSATL
Sbjct: 510 DFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATLRV 569
Query: 349 GKFQQ----YFDNAPLMNIPGRTHPVEISTLRNRK 441
F + + P++ I R +PV I R K
Sbjct: 570 TDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTK 604
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 106 bits (255), Expect = 2e-24
Identities = 54/134 (40%), Positives = 86/134 (64%), Gaps = 5/134 (3%)
Frame = +1
Query: 28 TQPRRVAAMSVAQRVAEEM-----DVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLREA 192
T+PRR++A+S+A RV++E+ + VGYS+R + P T L Y+T G LR
Sbjct: 684 TEPRRISAISLANRVSQELGGNPPSARSHELVGYSVRLDSKCTPLTPLTYVTTGTFLRLL 743
Query: 193 MSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFD 372
+E +++DE HER++ +D+L+ + ++KQ LK++IMSATL+A KFQ YF+
Sbjct: 744 EVGNEIESVTHLIIDEVHERSIDSDLLLIHVLHLLKQHPHLKIIIMSATLNAEKFQLYFE 803
Query: 373 NAPLMNIPGRTHPV 414
+ L+ IPG+T+PV
Sbjct: 804 GSNLITIPGKTYPV 817
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 417 FHWMRPTRDVHQWCIIEILLKFPS 346
F W T + + WCI + L FPS
Sbjct: 99 FAWKGETEEEYLWCIEQQLKSFPS 122
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 467 PNSSFQIIPFRLRSVEISTGCV 402
PNS F ++PF+L + IS +
Sbjct: 174 PNSEFAVLPFKLSFIRISIDAI 195
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 4.7
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +1
Query: 160 YMTDGMLLREAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSAT 339
++ MLL+ A+++ + R I+ DE H D G+++E + + +V +SAT
Sbjct: 839 HVLQSMLLQPALANAWCPKIRRIIFDEIHCIGQMED---GLVEEQLLLLAPCPIVALSAT 895
Query: 340 L-DAGKFQQYFDNAPLMNIPGRTHPVEISTLRNRKGIIWKLLLGLCRKF 483
+ + +FQ + + L ++P+ + +R + K + G ++F
Sbjct: 896 VGNPQEFQVWL--SALQR--AHSYPIHLIVHEHRYSDLRKFVYGGAKEF 940
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 142 PQTVLKYMTDGMLLREAMSD 201
P T+LK+ DGM+L A +D
Sbjct: 120 PLTILKFSNDGMVLFTASND 139
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 400 YQGCSSMVHYRNTAEISQHPRLQT 329
Y+ + HY ++IS P+LQT
Sbjct: 466 YEELMKICHYSGDSDISHFPKLQT 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,873
Number of Sequences: 5004
Number of extensions: 39960
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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