Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P09
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   0.94 
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    27   0.94 
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    27   0.94 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   2.2  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   2.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   3.8  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   5.0  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.7  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    24   8.8  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    24   8.8  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 238 YYNLKYHFY-KGKYSICGFTFVVFHMLMTSLTMFDV*G-SE*LVN 366
           Y N+K+    KG   I    FV+F  L+TSLT + + G SE L N
Sbjct: 311 YLNMKFASKTKGFSKISNVFFVIFLSLITSLTAYAILGESELLFN 355


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 258 MIFKVVIKTF-NHIKALSYACNKFDL 184
           M+F  ++K   +H+  L  ACNKFDL
Sbjct: 127 MLFDTILKCRKHHVPHLLIACNKFDL 152


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 270 TFIKMIFKVVIKTFNHIKALSYACNKFDL*GENYNYFWQ 154
           TF++++ K+    F+ IK   +A    DL  + Y+  W+
Sbjct: 9   TFLQLLGKLNASQFSQIKPAQFAIKHLDLEEDLYSCIWE 47


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 309 MKNDESKATDTVFTFIKMIFKVVIKTFNHIKAL 211
           M NDE   ++   TFI+ +   +I T  H  AL
Sbjct: 462 MDNDEDSESEDKVTFIQCVSTKLIATLRHENAL 494


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 229 KGFYYNLKYHFYKGKYSICGFTFVVFHMLM 318
           KG YY L Y F   KY++    F   HM +
Sbjct: 565 KGTYYRLSYLFSSLKYTLAENYFYYKHMYL 594


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 192 FDL*GENYNYFWQPYIS 142
           F L  ENYN++W+ +I+
Sbjct: 545 FQLCSENYNWWWRSFIT 561


>SPCC417.11c |||glutamate-1-semialdehyde
          2,1-aminomutaseaminotransferase |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 77 ITYSKKKSENSFIRRTLKSFKFH 9
          ++ +K+KSE  FI R  KS  FH
Sbjct: 8  LSLAKEKSEAQFIARNPKSNDFH 30


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 155 NPIYPLNSKLSIPPQTFILI*QSKNTITYSKKKSEN 48
           +P   +N  +S+PP    +   S N +   KK S+N
Sbjct: 69  SPSKIMNRSISVPPTNISVPQISSNPLNLMKKSSDN 104


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 52  SDFFLEYVIVFLLCYIRINVCGGILSLLFKGYIGL 156
           S   +  V++FLL Y+RI++   +   ++ G I L
Sbjct: 119 SGLLVSLVLIFLLAYLRISIDRYLPIAIWIGLISL 153


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 13  NLKDLSVRLIKLFSDFFLEYVI--VFLLCYIRINVCGGIL 126
           N K    +L+  +  +F+  +I  V L+C + I V GG+L
Sbjct: 72  NEKAAEKKLLPWYRRYFIWILIFIVALICSVLIGVLGGVL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,697
Number of Sequences: 5004
Number of extensions: 30165
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)