Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P09
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379...    27   3.6  
08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571           27   4.7  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    27   4.7  
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412...    26   8.2  
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095...    26   8.2  
05_03_0483 + 14585581-14587977                                         26   8.2  

>04_04_0648 -
           26936123-26936447,26936540-26936841,26937043-26937915,
           26937995-26938108,26938285-26938612,26938719-26938843,
           26938926-26938991,26939099-26939166,26939262-26939343,
           26939433-26939546,26939647-26939747,26940429-26940678
          Length = 915

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 270 TFIKMIFKVVIKTFNHIKALSYACNKFDL*GENY 169
           T+++ + +VV++ +NH+K L   C      GE Y
Sbjct: 158 TYVENLTEVVLRDWNHLKELISVCEAQRKTGETY 191


>08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571
          Length = 340

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 224 WLKVFITTLNIIFIKVNTVSVALLSSFFIC 313
           W K+ +  L+ +F+K+ TV + L+ + F+C
Sbjct: 16  WSKLPVDALSAVFMKLGTVEI-LMGASFVC 44


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 276 VFTFIKMIFKVVIKTFNHIKALSYACNKFDL*GENYNYFWQPYIS 142
           +F F+ ++F +++ T   I  +   C  F L  E+Y ++W+ Y++
Sbjct: 550 IFGFLFLVFAILVVTCAEIAVV--LCY-FQLCSEDYEWWWRSYLT 591


>07_01_0554 -
           4121692-4121895,4121991-4122148,4123241-4123354,
           4123824-4124082
          Length = 244

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 25  LSVRLIKLFSDFFLEYVIVFLLCYIRINVCGGILSLLFKGYI 150
           L   LI L    F++  I+F L  I   + GGI SL+F GYI
Sbjct: 163 LFASLIVLLVFAFIQ--ILFPLGRISQMIYGGIASLIFSGYI 202


>06_03_0508 -
           21607706-21608863,21608943-21609090,21609411-21609523,
           21609612-21609705,21609841-21609950,21610093-21610257,
           21611660-21611800
          Length = 642

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -1

Query: 276 VFTFIKMIFKVVIKTFNHIKALSYACNKFDL*GENYNYFWQPYIS 142
           +F F+ ++F ++I T   I  +   C  F L  E+Y+++W+ Y++
Sbjct: 533 IFGFLFIVFIILIVTCAEITIV--LCY-FQLCSEDYHWWWRAYLT 574


>05_03_0483 + 14585581-14587977
          Length = 798

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 232 GFYYNLKYHFYKGKYSICGFTFVVFHMLMTSLTMFD 339
           GFYY L++HF + +Y I       F + + + T+ D
Sbjct: 268 GFYYLLRFHFCEIQYPITKMNQRSFFIYINNQTVQD 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,230,045
Number of Sequences: 37544
Number of extensions: 139953
Number of successful extensions: 227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)