Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P09
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64840-3|AAB04961.2|  317|Caenorhabditis elegans Serpentine rece...    28   2.4  
AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine re...    27   5.7  
AF125952-10|AAD14693.2|  352|Caenorhabditis elegans Seven tm rec...    26   7.5  
AC006722-16|AAK68409.2|  308|Caenorhabditis elegans Hypothetical...    26   7.5  

>U64840-3|AAB04961.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 67 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 187 IKFVTSVR*SLYMVKGFYYNLKYHFYKGKYSI-CGFTFVVFHMLMT 321
           I+F+++   S + +  F++   Y  +  +Y + CG  FV++  + T
Sbjct: 111 IQFLSACSLSAHRISSFWWPTIYEMFWSQYYVACGLAFVIYSFMPT 156


>AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 1 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 193 FVTSVR*SLYMVKGFYYNLKYHFYKGKYSICGFTFVVFHMLMTSLTMFDV*GSE 354
           FV  V   +   + F    +   Y+ +Y  CG    +FH+ + +L +F +  SE
Sbjct: 111 FVVEVTPFVLTAERFVATFRARHYENRYKWCGVLLNIFHISL-ALFLFTIQSSE 163


>AF125952-10|AAD14693.2|  352|Caenorhabditis elegans Seven tm
           receptor protein 257 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 212 KAFIWLKVFITTLNIIFIKVNTVSVALLSSFFI 310
           +A I+ K    TLN++FI    +SVA+L+  FI
Sbjct: 77  RASIFPKYVACTLNLLFIGFFGMSVAILALHFI 109


>AC006722-16|AAK68409.2|  308|Caenorhabditis elegans Hypothetical
           protein Y19D10A.1 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 212 KAFIWLKVFITTLNIIFIKVNTVSVALLSSFFI 310
           +A I+ K    TLN++FI    +SVA+L+  FI
Sbjct: 59  RASIFPKYVACTLNLLFIGFFGMSVAILALHFI 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,014,573
Number of Sequences: 27780
Number of extensions: 154808
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)