Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P09
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 227  LKVFITTLNIIFIKVNTVSVALLSSFFIC 313
            +K+F+  LN++   V  + V +++   IC
Sbjct: 1578 MKIFMANLNLVVPVVAAILVIIVAVIVIC 1606


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 215 AFI--WLKVFITTLNIIFIKVNTVSVALLSSFFI 310
           AFI  WL  F+  L   F+K      A LSS F+
Sbjct: 380 AFIVCWLPFFVLALVRPFLKNPDAIPAFLSSLFL 413


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 19  KDLSVRLIKLFSDF 60
           +DLS+R+I  FS+F
Sbjct: 519 RDLSLRMILYFSEF 532


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 164 ISGNPIYPLNSKLSIPPQTFILI*QSKNTITY 69
           I+ N I   ++   + P TFIL+ ++  T+ +
Sbjct: 316 INRNGIACWDTNTELNPNTFILVAENNTTMVF 347


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 158 GNPIYPLNSKLSI 120
           GNPI PLN   S+
Sbjct: 424 GNPISPLNDWYSL 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,873
Number of Sequences: 438
Number of extensions: 1803
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)