Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P08
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    86   2e-18
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.7  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   4.8  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.4  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 35/73 (47%), Positives = 50/73 (68%)
 Frame = +3

Query: 15  LGWVAMSPAPAPYVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQY 194
           LGWV + P P  ++ EM D+ QFY NRV+K++K KD   +EW R+++ LL++L  YVK +
Sbjct: 205 LGWVTVEPTPLSFMSEMKDSSQFYANRVMKEFKGKDDLQIEWVRSYLTLLTELITYVKTH 264

Query: 195 HTTGLVWSGKGNA 233
             TGL WS K +A
Sbjct: 265 FKTGLTWSTKQDA 277



 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = +3

Query: 321 DRSALFAEINQGEGITSTLRKVTSDMQTPQETN 419
           D  A+FAEIN+GEGITS LRKV     T +  N
Sbjct: 333 DMGAVFAEINKGEGITSGLRKVDKSEMTHKNPN 365


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 18   GWVAMSPAPAPYVKE 62
            GW+  SP P P VKE
Sbjct: 2214 GWIMNSPVPVPTVKE 2228


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 17  WLGSHVPGPGALCERDERRWPVLYEPCP*GLERERQDPCRVVSRLG 154
           W   ++  PG L   D   WP  Y  C  G+   + DP   +S LG
Sbjct: 346 WTIGNLVRPGYLATSDGV-WPYSYNSCDAGITPNQSDPSG-ISYLG 389


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 163 NNCTQARHHSTW 128
           NNC   R HSTW
Sbjct: 53  NNCCNRRFHSTW 64


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 188 AIPYHRTRLVWKR*RWSTTTPSTGWYASTTSCAT 289
           ++PY  T +       S++TP T    +TT+C T
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTT 534



 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 188 AIPYHRTRLVWKR*RWSTTTPSTGWYASTTSCAT 289
           ++PY  T +       S++TP T    +TT+C T
Sbjct: 560 SVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTT 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,950
Number of Sequences: 5004
Number of extensions: 33862
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)