Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P08
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629...    75   2e-14
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    58   4e-09
04_04_0980 - 29868501-29868773,29868862-29869077,29869443-29869673     28   3.5  
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67...    27   6.1  
10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152     27   8.1  
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418...    27   8.1  

>08_02_0850 +
           21862110-21862394,21862555-21862723,21862901-21862965,
           21863632-21863905,21863998-21864145,21864237-21864346,
           21864440-21864495,21864568-21864624,21864733-21864876,
           21865304-21865351
          Length = 451

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
 Frame = +3

Query: 12  ALGWVAMS------PAPAPYVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQL-LSD 170
           AL W+  +      P P  +V+E     +FY+N+VL ++K KD  HVEW +A  +L +  
Sbjct: 140 ALAWIGYTGKGCGMPLPIAHVEESWQMAEFYSNKVLVEYKSKDPDHVEWAKALKELFVPS 199

Query: 171 LQAYVKQYHTTGLVWSGKGNAXXXXXXXXXXXXXXXXXXXDIDFSNLSIDDRSALFAEIN 350
           L+ YVK ++  G VW   G++                       S+      SA+FAEI+
Sbjct: 200 LRDYVKTFYPLGPVWQPPGSSTSKAPSAPCPPSASLFSSS--AQSSQPKTGMSAVFAEIS 257

Query: 351 QGEGITSTLRKVTSDMQTPQETN 419
            G+ +T  LR VT+DM++   T+
Sbjct: 258 SGKSMTQGLRTVTADMKSKNRTD 280


>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
 Frame = +3

Query: 42  PAPYVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQL-LSDLQAYVKQYHTTGLVWS 218
           P  +V+E     +FY N+VL +++ KD  HVEW +A  +L +  L+ +VK+++  G  W 
Sbjct: 160 PTAHVEESWQMAEFYNNKVLVEYRNKDADHVEWAKALKELYMPGLRDFVKKHYPLGPSWG 219

Query: 219 GKGNAXXXXXXXXXXXXXXXXXXXD----IDFSNLSIDDRS-----------ALFAEINQ 353
             G A                        +  + L   ++S           A+F EI+ 
Sbjct: 220 PVGGAPVSQPKATAPAPKAPGAKAPPPPALPSAPLFTTEKSPKSAQPKEGMSAVFQEISS 279

Query: 354 GEGITSTLRKVTSDMQTPQETN 419
           G+ +T+ LRKVT DM+T   ++
Sbjct: 280 GKAVTTGLRKVTDDMKTKNRSD 301


>04_04_0980 - 29868501-29868773,29868862-29869077,29869443-29869673
          Length = 239

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 90  SYRTGQRRSSLSHRAP 43
           SYRTG+RR  + HR+P
Sbjct: 216 SYRTGKRRKGVPHRSP 231


>03_01_0084 +
           676538-676669,677828-677959,678085-678210,678820-678882,
           678964-679061,679133-679340,679859-679930,680016-680108,
           680297-680398,680568-680665,681059-681140,681274-681362,
           681960-682065,682145-682210,682527-682633,682907-683027,
           683226-683411,683490-683789,683887-683967,684061-684225,
           684297-684383,684476-684601,684750-684830,684917-684988,
           685353-685364
          Length = 934

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 116 ERQDPCRVVSRLGTIVVRLASLRKAIPYHRTRLVWK 223
           + Q+  RV   LG I  R  + +   PY + + VWK
Sbjct: 22  KEQERLRVDKELGNIRTRFKNEKGLSPYEKKKYVWK 57


>10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152
          Length = 435

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 14  SWLGSHVPGPG-ALCERDERRWPVLYEPCP 100
           S  G H  GP  ALC R +RR P++   CP
Sbjct: 135 SGFGYHQSGPALALCSRGDRRGPMM--KCP 162


>03_01_0567 +
           4186620-4186694,4186766-4186852,4187293-4187932,
           4188009-4188094,4189620-4190010,4190102-4190172,
           4190738-4190856,4191517-4191793
          Length = 581

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 27  AMSPAPAPYVKEMNDAGQFYTNR 95
           AMSP  AP+VK + +  Q+  NR
Sbjct: 233 AMSPTAAPWVKTVRNGVQYNANR 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,741
Number of Sequences: 37544
Number of extensions: 253465
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)