Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P08
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...   118   2e-27
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...   118   2e-27
AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical ...    81   3e-16
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    27   5.5  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   5.5  
Z46935-5|CAL36508.1|  709|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score =  118 bits (283), Expect = 2e-27
 Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 22/159 (13%)
 Frame = +3

Query: 9    PALGWVAMSPAPAPYVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVK 188
            PALGWV +   PAPYVKE  +A QFY N +L+++KE D  HVEW +AW  +  ++Q +V+
Sbjct: 912  PALGWVTVKKTPAPYVKEFIEAAQFYINPILREFKETDPRHVEWTKAWKAVFEEMQKFVR 971

Query: 189  QYHTTGLVWSGKGNAXXXXXXXXXXXXXXXXXXXDID---------------FSNLS--- 314
            Q HTTGLVW+    A                                     F+N++   
Sbjct: 972  QVHTTGLVWNSAPGAAPDASASAPSAAAPSAPKAPAGPGGPPPPPPPPPADFFANIAPPP 1031

Query: 315  ID----DRSALFAEINQGEGITSTLRKVTSDMQTPQETN 419
            +D     R ALFA +NQGEG+TS L+KVT+DMQT +  N
Sbjct: 1032 VDADKASRDALFASLNQGEGVTSRLKKVTADMQTHKNPN 1070


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score =  118 bits (283), Expect = 2e-27
 Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 22/159 (13%)
 Frame = +3

Query: 9   PALGWVAMSPAPAPYVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVK 188
           PALGWV +   PAPYVKE  +A QFY N +L+++KE D  HVEW +AW  +  ++Q +V+
Sbjct: 151 PALGWVTVKKTPAPYVKEFIEAAQFYINPILREFKETDPRHVEWTKAWKAVFEEMQKFVR 210

Query: 189 QYHTTGLVWSGKGNAXXXXXXXXXXXXXXXXXXXDID---------------FSNLS--- 314
           Q HTTGLVW+    A                                     F+N++   
Sbjct: 211 QVHTTGLVWNSAPGAAPDASASAPSAAAPSAPKAPAGPGGPPPPPPPPPADFFANIAPPP 270

Query: 315 ID----DRSALFAEINQGEGITSTLRKVTSDMQTPQETN 419
           +D     R ALFA +NQGEG+TS L+KVT+DMQT +  N
Sbjct: 271 VDADKASRDALFASLNQGEGVTSRLKKVTADMQTHKNPN 309


>AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical
           protein C18E3.6 protein.
          Length = 457

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 48/131 (36%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
 Frame = +3

Query: 18  GWVAMSPAPAPYVKEMNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQLLSDLQAYVKQYH 197
           GWVA    PAP++K+  D   FY NR+L + K K+  H EW ++  +L+  L  YV+Q+H
Sbjct: 137 GWVAEPKTPAPFIKDAIDTSVFYLNRILMEHKGKNDFHSEWAKSIKELMLSLHEYVRQHH 196

Query: 198 TTGLVW-SGKGNAXXXXXXXXXXXXXXXXXXXDIDFSNLSIDDR-SALFAEINQGEGITS 371
           TTGLVW S  G                      I     S      AL   +N G   TS
Sbjct: 197 TTGLVWNSDPGATPMCNRKSGGAPTPPPPPPPPISLIAPSKPSGVGALLESLNTGLSATS 256

Query: 372 TLRKVTSDMQT 404
            L+KVT +MQT
Sbjct: 257 RLKKVTPEMQT 267


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 63  MNDAGQFYTNRVLKDWKEKDKTHVEWCRAWVQ 158
           M D  Q+Y  R+ ++W    K+ V     W Q
Sbjct: 604 MQDDAQYYVVRIFEEWTPNSKSGVIGVHGWSQ 635


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 345 FQRKGHCDHRSTNWRNLCPVAQEVV 271
           FQ K HC+     W N C + Q ++
Sbjct: 514 FQSKEHCESTCPVWTNPCAIGQPIM 538


>Z46935-5|CAL36508.1|  709|Caenorhabditis elegans Hypothetical
           protein M106.4c protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 374 SAGDSFALIDFSEKGTAIIDRQIGEIYV 291
           S+G+  A++DF  +   +IDR++ E+ V
Sbjct: 20  SSGERIAILDFGAQYGKVIDRRVRELLV 47


>Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical
           protein M106.4b protein.
          Length = 794

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 374 SAGDSFALIDFSEKGTAIIDRQIGEIYV 291
           S+G+  A++DF  +   +IDR++ E+ V
Sbjct: 105 SSGERIAILDFGAQYGKVIDRRVRELLV 132


>Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical
           protein M106.4a protein.
          Length = 792

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 374 SAGDSFALIDFSEKGTAIIDRQIGEIYV 291
           S+G+  A++DF  +   +IDR++ E+ V
Sbjct: 103 SSGERIAILDFGAQYGKVIDRRVRELLV 130


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 150 RRDTTRHGSCLSLSNP 103
           RRD TR G+CL L++P
Sbjct: 12  RRDITRDGTCLILADP 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,144,788
Number of Sequences: 27780
Number of extensions: 195808
Number of successful extensions: 554
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)