Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P08
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   9.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 179 LRKAIPYHRTRLVWK 223
           + KAI +H  ++VWK
Sbjct: 122 MTKAILHHTGKVVWK 136


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/53 (20%), Positives = 23/53 (43%)
 Frame = -1

Query: 273 VEAYHPVEGVVVLQRYLFQTKRVLWYGIALRRLASLTTIVPRRDTTRHGSCLS 115
           +++ H V G+     Y  Q     W+ I+   ++ ++  + R      G C+S
Sbjct: 1   MDSSHVVRGIEHGGLYYHQRCSRDWFRISAGCVSRISNRISRNRVLLRGQCIS 53


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = +2

Query: 263 YASTTSCATGHRFLQFVDR*SQCPFR*NQSGRRNHQHSA*GD 388
           Y     C T H   +F D   +C  R  ++   N +    GD
Sbjct: 357 YTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGD 398


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 154 YNCCQTCKPT*SNTIPQDSFGLEKV 228
           Y+C  TC    S+ I  D   L+K+
Sbjct: 75  YSCFITCALEKSHIIQNDEIQLDKL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,971
Number of Sequences: 438
Number of extensions: 2368
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)