Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P07
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   4.3  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   5.7  
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    25   9.9  

>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 94  FENKIKHLSKNSFRNISMIP 35
           FEN +++ S N+ RNI +IP
Sbjct: 201 FENFVRNHSSNALRNIPIIP 220


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 548 LLIYFICLINCIHNIIQYYIYYKPYTFRY 462
           L  YFI L+  I+ +I   I Y+P    Y
Sbjct: 238 LFAYFIILLRIINEVILLAINYRPIPLSY 266


>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 551 FLLIYFICLINCIHNIIQYYIYYKPYT 471
           FLL+  +C   CI   +Q  +Y K  T
Sbjct: 6   FLLLSVLCFAGCIQQSLQAEVYGKVLT 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,994
Number of Sequences: 5004
Number of extensions: 29526
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)