Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P07
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical pr...    30   0.97 
AL032647-5|CAA21693.1|  370|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   5.2  

>Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical
           protein C38C10.1 protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = -3

Query: 551 FLLIYFICLINCIHNIIQYYIYYKPYT--FRYTFTYV----TKTQKIQYEMLSP 408
           +LLIY+I + +C +N I Y    + +   FRY F ++     K ++ +Y  L P
Sbjct: 265 YLLIYWIAMSSCAYNPIIYCFANERFRIGFRYVFRWIPVIDCKKEQYEYSQLFP 318


>AL032647-5|CAA21693.1|  370|Caenorhabditis elegans Hypothetical
           protein Y57A10B.6 protein.
          Length = 370

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = -1

Query: 403 NNNNYISHLXXXXXXXXXIRTLTSQYSTVRLDPRPSR*IQRNRFQHLQMRHLHNNK 236
           N+  Y +H+          + +T  +S ++    P   ++++ F ++  RH  NN+
Sbjct: 2   NDTEYTAHILARTIRTGDDKLITKAFSQLKFGTVPMDILEQHNFPYIVQRHAPNNQ 57


>Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical
           protein M03C11.2 protein.
          Length = 848

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 151 KWNTIVWNASHNN-NSFKCTFENKIKHLSKNSFRNISM 41
           K N IV + +HN  N+    F  K++ +SKN F+N S+
Sbjct: 344 KDNVIVLDEAHNVLNTISSFFFRKLEKVSKNGFKNCSL 381


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 536  FICLINCIHNIIQYYIYYKPYTFRYTFTYVT 444
            FIC ++C++ I Q Y    P  F +++ Y++
Sbjct: 1338 FICFLDCVYQISQQY----PTAFEFSYFYIS 1364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,942
Number of Sequences: 27780
Number of extensions: 163525
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)