Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P06
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    93   1e-19
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine r...    29   2.7  
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
 Frame = +2

Query: 11  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 190
           MK+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K K
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 191 K---GQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRN 295
           K   GQE+                + G SL  I+AKRN
Sbjct: 61  KGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +2

Query: 11  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 181
           M+I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine
           receptor, class i protein73 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 234 VLLVRFLACSSSWPFLNLRL-YRTVHVTLRGFLLIKWAASHLEFKNVNVL 88
           V  V  + C +   FL L L +   HV + G +LI W ASH     +++L
Sbjct: 245 VQFVTAMLCLAPPIFLTLVLIFEVPHVNVIGEILIAWFASHSSINMISLL 294


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 351 SFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPF 190
           S A +I  ++C   TS   +   +   ++A T+A   F + L+    C  SW F
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 178


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 351 SFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPF 190
           S A +I  ++C   TS   +   +   ++A T+A   F + L+    C  SW F
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 246


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 351 SFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPF 190
           S A +I  ++C   TS   +   +   ++A T+A   F + L+    C  SW F
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,851,283
Number of Sequences: 27780
Number of extensions: 184837
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)