Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P05
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    39   4e-04
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    37   0.002
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   2.9  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    26   3.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   6.6  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   6.6  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   8.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.7  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +3

Query: 141 VLTDDVSLQVFMEHLKKLAVS 203
           +LTDDVSLQ FM HLKKLAV+
Sbjct: 737 ILTDDVSLQTFMSHLKKLAVA 757


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 141 VLTDDVSLQVFMEHLKKLAVSS 206
           VLTDDV+LQ FM+HL+K+AV S
Sbjct: 744 VLTDDVNLQKFMDHLRKMAVIS 765


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 294 MRMIVKINLKQLLSSIPDSSKDICDIFKQSRRLPASSDVP*TLVETRRQ 148
           M ++VK+    ++SSI     ++  + K SR LP    +  +L   R++
Sbjct: 320 MEVVVKVQYPGVMSSIDSDLNNLAYLLKASRILPKGLFLENSLAAARKE 368


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 343 DYVEYALLGLIGRRRAKTFVSFL*LVDEFSELIP-TIFSFYSDVTGI-CI 486
           +YV    L L    + KT  +FL  +D++S LIP  +  +Y  ++G  C+
Sbjct: 75  NYVIEPHLELRDMAKDKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCV 124


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 161 STSVYGTSEEAGSLLDCLNMSQMSFELSGIED 256
           S S+YGT  +  SLL+C+ +   + E +G  D
Sbjct: 338 SVSLYGTQSQLDSLLECVPLG--TIEANGHPD 367


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 280 DNHSHYNTI*VYRLNILISDLDYV 351
           DNHS YNT+ V  L+ +   L+Y+
Sbjct: 259 DNHSLYNTLPVATLHAINLGLEYM 282


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 444 GNKFAKLIYQSQERYKGLRATSTNQT*ERVLYIVKVTYQDV*PVHLNGII 295
           G + A+++   Q+R KGL   +T    ER+  ++     D+  VH+N ++
Sbjct: 72  GEEAARIVLAKQDRSKGLVLATTG---ERMTSLIFSLVIDLVGVHVNKLL 118


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 303  GIIMRMIVKINLKQLLSSIPDSSKDICDIFKQ 208
            G IMR I +I+L++  SS+   S D C + ++
Sbjct: 1127 GRIMRAIFEISLRRGWSSVATLSLDTCKMIEK 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,633
Number of Sequences: 5004
Number of extensions: 42009
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)