Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P05
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968     40   9e-04
08_02_0993 + 23390237-23390516,23391261-23391438,23391865-233919...    37   0.008
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378...    36   0.014
08_02_0389 + 16609182-16609207,16609579-16609933                       30   0.94 
11_04_0112 - 13585293-13585988,13586095-13586619                       27   8.8  
01_03_0140 - 12979580-12980158,12980297-12980479,12980721-129809...    27   8.8  

>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
          Length = 800

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +3

Query: 120 IQDGGAPVLTDDVSLQVFMEHLKKLAV 200
           + DG   + TDDVSLQVF+EHL++LAV
Sbjct: 729 LSDGSEVIFTDDVSLQVFIEHLQELAV 755


>08_02_0993 +
           23390237-23390516,23391261-23391438,23391865-23391940,
           23392037-23392212,23392296-23392377,23392639-23392716,
           23393525-23393686,23393980-23394243,23394698-23394802,
           23395304-23395447
          Length = 514

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +3

Query: 129 GGAPVLTDDVSLQVFMEHLKKLAV 200
           GG  + TDDVS +VFM+HL++LAV
Sbjct: 490 GGDVIFTDDVSFEVFMDHLQRLAV 513


>11_04_0096 +
           13435988-13436803,13436880-13437053,13437673-13437834,
           13438548-13438690,13439059-13439134,13439231-13439403,
           13439482-13439563,13439949-13440026,13440369-13440461,
           13441026-13441187,13441225-13441530,13442265-13442369,
           13443097-13443243
          Length = 838

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 120 IQDGGAPVLTDDVSLQVFMEHLKKLAVSS 206
           +  G   + TDDVS QVF EHL++LAV S
Sbjct: 810 VPPGSDIIFTDDVSFQVFCEHLQRLAVQS 838


>08_02_0389 + 16609182-16609207,16609579-16609933
          Length = 126

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 89  YCVMVNVKLVHTGRWRPRVD*RRVSTSVYGTSEEAGSLLDCLNMSQMSFELSG 247
           + ++++  LV      P++D R+++ +  GT+   G +  CL  +   FEL+G
Sbjct: 37  FLILLSSSLVKINEKPPKLDHRKLAAAAGGTNVVEGRIAVCLVGAAQRFELTG 89


>11_04_0112 - 13585293-13585988,13586095-13586619
          Length = 406

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 236 QKTSVTYLSSRGDCQLLQMFHKH 168
           Q T + Y SS GDC ++Q   KH
Sbjct: 20  QSTPLHYASSDGDCSVIQEILKH 42


>01_03_0140 -
           12979580-12980158,12980297-12980479,12980721-12980914,
           12980974-12980998
          Length = 326

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -1

Query: 415 ITRT-IQRSSRDVDQSDLRARTLHSQGHLSRCLTGTLKWYYNENDCQN*FKTIIILYTGQ 239
           I+RT ++ S+  +  + LRAR   + G   + ++G +   YNE D        I +  G+
Sbjct: 117 ISRTFVELSAYSIWTTGLRARCSFALGRNVKVISGYMAQVYNEKDNNGSPPPYITM--GE 174

Query: 238 FKRHL*HI*AVEETASFFRCSINTCRDTSS 149
            K+HL      E+T   +R  +++   T+S
Sbjct: 175 EKQHL------EKTPDGYRIKVSSLGTTTS 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,267
Number of Sequences: 37544
Number of extensions: 248835
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)