Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P05
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    46   1e-05
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z50016-15|CAA90319.1|  329|Caenorhabditis elegans Hypothetical p...    28   3.4  
AL032621-9|CAA21496.1|  329|Caenorhabditis elegans Hypothetical ...    28   3.4  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    28   3.4  

>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +3

Query: 111 NLFIQDGGAPVLTDDVSLQVFMEHLKKLAVSST 209
           N +  + G+ V TDDVSLQVFMEHLKKL+ SS+
Sbjct: 788 NPYANEAGSAVFTDDVSLQVFMEHLKKLSSSSS 820


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 205 EETASFFRCSINTCRDTSSVNTG-APPSC 122
           ++ +++F+C+++TC +T  +  G  PP C
Sbjct: 249 DKVSTYFQCAVSTCMNTEGMCDGKTPPRC 277


>Z50016-15|CAA90319.1|  329|Caenorhabditis elegans Hypothetical
           protein Y45F3A.1 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 104 NVKLVHTGRWRPRVD*RRVSTSVYGTSEEAGSLLDCLNMSQMSFELSGIED 256
           N++     RW   V+ RRVS  +  T  E    ++C     +S E S +ED
Sbjct: 178 NIEKFDASRWLLNVEKRRVSDILDRTKREPKMGIECRKPYIVSSEASSLED 228


>AL032621-9|CAA21496.1|  329|Caenorhabditis elegans Hypothetical
           protein Y45F3A.1 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 104 NVKLVHTGRWRPRVD*RRVSTSVYGTSEEAGSLLDCLNMSQMSFELSGIED 256
           N++     RW   V+ RRVS  +  T  E    ++C     +S E S +ED
Sbjct: 178 NIEKFDASRWLLNVEKRRVSDILDRTKREPKMGIECRKPYIVSSEASSLED 228


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = -2

Query: 312  HLNGIIMRMIVKINLKQL--LSSIPDSSKDICDIFKQS-RRLPASSDVP 175
            H+   + +++  ++LK L  L ++ +SS +IC++FK +  R P  SD+P
Sbjct: 929  HIADALNQIVGFLHLKSLQNLYTMSNSSDEICNLFKTAVDRCPDLSDLP 977


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,779,732
Number of Sequences: 27780
Number of extensions: 234766
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)