Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P04
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   198   5e-52
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   196   1e-51
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   2.7  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   6.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   6.1  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.1  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  198 bits (482), Expect = 5e-52
 Identities = 90/156 (57%), Positives = 113/156 (72%)
 Frame = +3

Query: 21  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 200
           M RYS  P    K  KARG+ LR HFKN+ E A  I  + L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 201 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVN 380
           RRFNGGVGR AQ K+FG TQ RWP KS +F   LL+NAE+NA+ KGLD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 381 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDA 488
            AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+A
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEA 156


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  196 bits (479), Expect = 1e-51
 Identities = 90/156 (57%), Positives = 112/156 (71%)
 Frame = +3

Query: 21  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 200
           M RYS  P    K  KARG+ LR HFKN+ E A  I  + L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 201 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVN 380
           RRFNGGVGR AQ K+FG TQ RWP KS  F   LL+NAE+NA+ KGLD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 381 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDA 488
            AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+A
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEA 156


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 81  NLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEK-KECI 194
           NLRV  K T ++ +++   P  +  RYLK + E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 287 FCRFLGPTTLCGTKLFSLCTTANSTVKTTEGNAFLLFCHIL 165
           F   L P T+C   L S+ + A  +++ T    F+ F H L
Sbjct: 192 FLSTLTPGTVCRLVLPSILSPAFYSIRATHPQHFIRFIHTL 232


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 122 GYKKTASSPCCPLPKECDRKEGMHSL 199
           GY   + S   P+PK+  RKE  +SL
Sbjct: 262 GYSDHSVSVAAPIPKKESRKESSNSL 287


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 78  SNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKK 185
           +N ++  K+  ETA A+RK+  +  +R L+ + ++K
Sbjct: 73  TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,299
Number of Sequences: 5004
Number of extensions: 40011
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)