Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P04
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   248   2e-66
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   159   8e-40
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   5.5  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   9.7  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  248 bits (607), Expect = 2e-66
 Identities = 113/152 (74%), Positives = 130/152 (85%)
 Frame = +3

Query: 30  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 209
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 210 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 389
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+YKGLDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 390 CLRRRTYRAHGRINPYMSSPCHIEVCLSERED 485
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKED 157


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  159 bits (387), Expect = 8e-40
 Identities = 88/152 (57%), Positives = 100/152 (65%)
 Frame = +3

Query: 30  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 209
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 210 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAP 389
                                    + L     NAE    YKGLDVD LVI+HI V RA 
Sbjct: 66  ------------------------LDLLKNAESNAE----YKGLDVDHLVIEHINVQRAA 97

Query: 390 CLRRRTYRAHGRINPYMSSPCHIEVCLSERED 485
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKED 129


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 297 GAGILQISWANDPVWYQTV*LVH 229
           GAG+ +I W N+  W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +3

Query: 267 WPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 428
           W K+    +  LL  AE++      D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 429 NPYMSSPCHIEVCLSER 479
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 156 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 335
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 336 GLD 344
           G +
Sbjct: 554 GYE 556


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 156 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYK 335
           RY  +  EKK+  P   +   V + + + ++ T   R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 336 GLD 344
           G +
Sbjct: 554 GYE 556


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 21/91 (23%), Positives = 37/91 (40%)
 Frame = +3

Query: 48   NPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGR 227
            N  +S  + G++   H   T  T     K+PL    + ++  +  K C  F R    + +
Sbjct: 1036 NTPRSSISGGTHQTTHTAPTSRTHHDANKVPLNNVYKVIRFYSFWKTCTSFHRIVTMIDK 1095

Query: 228  CAQAKQFGTTQGRWPKKSAEFLLQLLRNAES 320
                 +  T+ G    K   F+  L RNA++
Sbjct: 1096 VVD--EPSTSSGGTTFKKRLFVQYLWRNAKA 1124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,772
Number of Sequences: 27780
Number of extensions: 240189
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)