Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P03
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   4.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   8.1  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = -1

Query: 393 NSITMFPTIFRSAFVFNTTDL-VFVSIRKSKIFWFFNPVTDTLLK*NNKRISSSARTS-- 223
           NS++++       F   T  + +  SI   +++WF     D + +   ++     R S  
Sbjct: 71  NSLSIWQQFILYGFTAITVPIWMHGSISFIRLYWFRRKFKDVVRQNRTRKFQRKLRKSLM 130

Query: 222 ---KDDMNQGSMGGYYTV*CLYLFSQEIPSSM 136
              +DD  QG  G    V   YL S   P+S+
Sbjct: 131 KKSEDDEEQGVRGRKIRVMLPYLHSLRSPTSL 162


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 322 VNTKIKDFLVLQSGHGHIIKVKQQTHILVSQD 227
           +NT   DFL +Q     ++  K+Q  +++SQ+
Sbjct: 521 INTNHPDFLGVQGAMAVVLSRKEQNRLMLSQE 552


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 503 FEVGPEIINCENINDIKVQLDS 568
           F++ P++    NI DI+ Q+ S
Sbjct: 16  FQIAPDVKTISNIQDIRAQIQS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,003
Number of Sequences: 5004
Number of extensions: 53218
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)