Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P03
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405...    29   3.6  
12_02_0805 - 23329048-23329322,23330049-23330301,23330793-233310...    28   6.3  
08_02_1555 + 27849691-27849840,27850851-27850973                       27   8.3  

>04_04_0632 +
           26738969-26739350,26739535-26739543,26739674-26740545,
           26743048-26743098,26743966-26744127,26744278-26744519,
           26744772-26744859,26744964-26745158
          Length = 666

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 151 NTFVDDPNNPICHVAWYH 98
           N +++DPN P+ +  WYH
Sbjct: 123 NNWMNDPNGPLYYKGWYH 140


>12_02_0805 -
           23329048-23329322,23330049-23330301,23330793-23331029,
           23332048-23332176,23334205-23334210
          Length = 299

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 362 LNIVGNIVIELGEKSKLFSGTYTAQATS 445
           L+ +GN  I LGE+ KLF+ T  A  T+
Sbjct: 42  LDFIGNGTISLGEQVKLFTKTKEAMITA 69


>08_02_1555 + 27849691-27849840,27850851-27850973
          Length = 90

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  CGTMRHDRLDCLGHRRRYFLRKQV 168
           CG +R D L+CL H + +  R ++
Sbjct: 34  CGLLREDYLECLHHSKEFQRRNRI 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,043
Number of Sequences: 37544
Number of extensions: 302292
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)