Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P03
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   5.6  
U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 365  NIVGNIVIELGEKSKLFSGTYTAQATSVGAAKYGYDLKMDSTGVL 499
            NI  N+  +L         T  A+A + G   Y Y   +D TG++
Sbjct: 1788 NIAKNLANQLASTLDTLENTLAARAIATGNLPYDYSNSVDGTGMV 1832


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 365  NIVGNIVIELGEKSKLFSGTYTAQATSVGAAKYGYDLKMDSTGVL 499
            NI  N+  +L         T  A+A + G   Y Y   +D TG++
Sbjct: 1788 NIAKNLANQLASTLDTLENTLAARAIATGNLPYDYSNSVDGTGMV 1832


>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 532 TVYYLWANFKMQYTGGVHL*IISILCSSYASCLCCVSSGEQF*FLA*FYN 383
           T +  W N+K+  T  +   +++I+C + A+ L     G+Q   +  F+N
Sbjct: 97  TTFTFWLNYKLHETSTLGYHVVNIICHTVAT-LVFYKLGKQLEHIFDFFN 145


>AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical
           protein Y47H10A.1 protein.
          Length = 702

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 115 DRLDCLGHRRRYFLRKQVKASNSIISAH-RPLVHIILRRPG 234
           +R  CL  +R  F   Q  A+NS I    RP  HI+ +RPG
Sbjct: 205 ERQKCLDEKR-LFEDPQFPANNSSIYVKVRPKDHIVWKRPG 244


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 356 ADLNIVGNIVIELGEKSKLFSGTYTAQATSVGAAKYGYDLKMDSTGVL 499
           AD  IV + +     K   F+G     AT +   KYG D+  D+  VL
Sbjct: 52  ADGAIVSSQIANAESKQLQFTGDVLEIATQILVKKYGVDILEDANEVL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,764
Number of Sequences: 27780
Number of extensions: 296612
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)