Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P02
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   275   1e-74
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    31   0.48 
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    31   0.48 
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    29   1.9  
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   2.6  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   7.8  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    27   7.8  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    27   7.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  275 bits (675), Expect = 1e-74
 Identities = 127/196 (64%), Positives = 152/196 (77%)
 Frame = +1

Query: 13  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 192
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 193 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 372
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 373 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCL 552
           LCKV+ V T  K VP L T DGRT+RYPDP +KVND++  +IST KI D +KF+ GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 553 ITGGRNLGRVGTIVSR 600
           +TGGRN+GRVG I  R
Sbjct: 182 VTGGRNVGRVGIIGHR 197


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +3

Query: 339 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 512
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 513 HGLHQVRLRQPLPDHRRQE 569
           H +HQV  +      R Q+
Sbjct: 483 HPMHQVEDQMQRQHQRMQQ 501


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +3

Query: 339 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 512
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 513 HGLHQVRLRQPLPDHRRQE 569
           H +HQV  +      R Q+
Sbjct: 483 HPMHQVEDQMQRQHQRMQQ 501


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 362 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 204
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 362 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 204
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 537 RQPLPDHRRQESGSRRHHRL 596
           +QP+P HR   SGSRR  R+
Sbjct: 98  QQPIPSHRHSASGSRRQSRV 117


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 325 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 456
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -3

Query: 231 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 139
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -3

Query: 231 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 139
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 320 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 210
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +3

Query: 378 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLRQPLPDH 557
           +G   R  PQ    P   + A      P+ Q ++    +   +Q H  HQ RL+Q     
Sbjct: 191 RGCPARSAPQRVPAPPAQQYAPRAPEYPSAQQQQQQREQQQREQQHREHQARLQQHQQQQ 250

Query: 558 RRQE 569
           ++Q+
Sbjct: 251 QQQQ 254


>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 445 LRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCLI 555
           L +PD LIK+    Q++ STN    F+ +D   L ++
Sbjct: 34  LLFPDFLIKIRLLFQMNASTNATTTFVPWDHKTLQIV 70


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 338 STVSHLK-KPSTSCARCGASRP 400
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 392 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 249
           T R    LYL       I +I+ L   S++K NNSF+F      I+   Y
Sbjct: 15  TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -1

Query: 332 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 153
           N     YI+ +    F +D+T  N  G + SV ++ +T      TI  +++ +++  S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 385 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 519
           R ++TG  ++P   +HD + +   D L K +    + +S+++ MD
Sbjct: 18  RCLSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,416,371
Number of Sequences: 27780
Number of extensions: 289862
Number of successful extensions: 993
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)