Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P01
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112...    29   4.1  
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855...    28   5.4  

>03_02_0909 -
           12310460-12310759,12310882-12310989,12311099-12311272,
           12311370-12311490,12311569-12311651,12311754-12312420,
           12314073-12314440
          Length = 606

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +3

Query: 15  PDVVPDER-----SDVTHPTNMELVTDIDIGIPESHA 110
           PDVVP E      SDV  PT ++  TD+ I  P+S A
Sbjct: 157 PDVVPSENVEFDFSDVFGPTAVQTPTDLSILTPDSPA 193


>03_02_0445 -
           8551912-8552047,8552729-8552896,8553785-8554068,
           8554143-8555386,8556901-8556967,8557059-8557150,
           8557269-8557480,8558541-8558623,8559092-8559122,
           8559770-8559951,8560557-8560616,8561092-8561289,
           8561485-8561539,8562740-8562855,8563012-8563176,
           8563310-8563483,8564134-8564333,8564778-8564882,
           8565063-8565126,8566452-8566718
          Length = 1300

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 9   PAPDVVPDERSDVTHPTNMELVTDIDIGIPESHAQEICVPVTSEIL 146
           P P ++     D T+P++ EL++ +D+ I +S   EI VP    I+
Sbjct: 642 PLPHLLAQLVLDFTYPSSAELLSHVDM-ICKSEGVEITVPQQKHII 686


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,955,347
Number of Sequences: 37544
Number of extensions: 151043
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)