Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P01
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    31   0.92 
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    29   2.8  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    29   2.8  
Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82052-9|CAB04825.2|  338|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 356 TWSSRFCFRSNCRGYCSCSHSRSSAYGHISTNRC--SDFSSR*C 231
           TWS  +C  S C   C       + + H+ TNRC   D+ S  C
Sbjct: 504 TWSE-WCEWSTCSASCGSGQRERTRFCHLGTNRCEGKDYESEQC 546


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 33  ERSDVTHPTNMELVTDIDIGIPESHAQEICVPVTSE 140
           E   VT  T  ELVTD+ I +P+   ++I   + +E
Sbjct: 280 EEPTVTEETTTELVTDVTIALPDEEFEDINAKIETE 315


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 362 NYQPHQLQSQNRGPQNQLPV 421
           N QP +LQ+QNR P+N+L V
Sbjct: 456 NQQPPELQAQNRRPRNKLVV 475


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 362 NYQPHQLQSQNRGPQNQLPV 421
           N QP +LQ+QNR P+N+L V
Sbjct: 456 NQQPPELQAQNRRPRNKLVV 475


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 362 NYQPHQLQSQNRGPQNQLPV 421
           N QP +LQ+QNR P+N+L V
Sbjct: 456 NQQPPELQAQNRRPRNKLVV 475


>Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical
           protein H03A11.1 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 362 FFTWSSRFCFRSNCRGYCSCSHS 294
           FF+ +  FCF S C  YC  +H+
Sbjct: 260 FFSPAKNFCFVSRCDYYCDTTHA 282


>Z82052-9|CAB04825.2|  338|Caenorhabditis elegans Hypothetical
           protein T25E12.7 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 430 VFANWQLILGSSILTLELVWLIIF 359
           +F NW+LIL  +I TL LV  I+F
Sbjct: 29  IFDNWKLILYGAISTLILVLAIMF 52


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 338 CFRSNCRGYCSCSHSRSSAYGHISTNRCSDFSSR*CISKRS 216
           C   N     S  + R+  +GHI +NRC   S++   S+RS
Sbjct: 756 CINVNGTDCGSRENGRNHPHGHIRSNRCPSRSTKRAKSQRS 796


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,365,553
Number of Sequences: 27780
Number of extensions: 130838
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)