Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O24
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    60   1e-10
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    57   6e-10
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    38   5e-04
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   0.77 
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   1.3  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    25   4.1  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   7.1  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   7.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    23   9.4  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 59.7 bits (138), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = -1

Query: 330 MDKC-NDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           +DK   +TI+WLD N  A K+EYE KQKELEGV NPI+ K+YQ
Sbjct: 568 IDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 57.2 bits (132), Expect = 6e-10
 Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = -1

Query: 330 MDKC-NDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           +DK   +TI+WLDSN  A K+E+E KQKELE V NPI+ K+YQ
Sbjct: 568 VDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 37.5 bits (83), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -1

Query: 333 IMDKCNDTIKWLDSN-QLADKEEYEHKQKELEGVCNPIITKLY 208
           ++D   D  +WL+ + + A KEE+E ++++L+ V +PI  KLY
Sbjct: 599 VLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
 Frame = -2

Query: 335 SSWTSATTPSNGSTRISWLIRKSMSTSRRNWRVFATRSSRSCTRXXXXXXXXXXXXXPGS 156
           SS++S T+ S  S+  S  +  S STS       ++ SSR  +                S
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSS 412

Query: 155 LAEH-PVREAQRPAEVPDPPSRRSTKHS 75
            +   PV  A          S  S+ HS
Sbjct: 413 KSSSAPVSSAFYHNSTSSRSSSHSSSHS 440


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 228 GCKHPPVPSACAHTLPYQP 284
           GC H  +P A A+  PY P
Sbjct: 386 GCNHTVLPEAAAYPKPYYP 404


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 288 QLADKEEYEHKQKELEGVCNPI 223
           +L  KE+Y+   KEL+ VCN +
Sbjct: 109 KLPTKEQYQAYVKELKPVCNEL 130


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 161 GSLAEHPVREA-QRPAEVPDPPSRRSTKHS 75
           G+ AEHPV+EA   P E     S+ +T  S
Sbjct: 439 GTTAEHPVQEAVTAPTETAHDFSKETTTAS 468


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 143 PVREAQRPAEVPDPPSRRSTKHSTINN 63
           PV   QRP E P  PS  + K   +++
Sbjct: 169 PVLLTQRPCETPPTPSIEALKRKELSS 195


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 140 VREAQRPAEVPDPPSRRST 84
           +R    P   P PPSRR T
Sbjct: 365 LRNRTSPTAAPPPPSRRKT 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 973,596
Number of Sequences: 5004
Number of extensions: 11532
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)