Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O24
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical pr...    75   2e-14
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    65   1e-11
Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical pr...    54   3e-08
Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical pr...    54   3e-08
Z81467-1|CAB03871.1|  643|Caenorhabditis elegans Hypothetical pr...    53   4e-08
M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein ( C.ele...    43   5e-05
AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock pr...    43   5e-05
U56965-1|AAB52671.1|  661|Caenorhabditis elegans Heat shock prot...    40   6e-04
M26604-1|AAA28074.1|  661|Caenorhabditis elegans protein ( C. el...    40   6e-04
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    27   3.3  
U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical
           protein F26D10.3 protein.
          Length = 640

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 30/43 (69%), Positives = 39/43 (90%)
 Frame = -1

Query: 333 IMDKCNDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           I DKC++ +KWLDSNQ A+KEE+EH+QK+LEG+ NPII+KLYQ
Sbjct: 571 IEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQ 613


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 26/43 (60%), Positives = 36/43 (83%)
 Frame = -1

Query: 333 IMDKCNDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           I DKC++ +KWLDSNQ A+KEE+E +QK+LEG+  P ++KLYQ
Sbjct: 571 IEDKCDEILKWLDSNQTAEKEEFESQQKDLEGLAKPDLSKLYQ 613


>Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.5 protein.
          Length = 645

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 21/38 (55%), Positives = 31/38 (81%)
 Frame = -1

Query: 318 NDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           ++T++WLDSN LA+K+E E K KEL+ VC  I+TK++Q
Sbjct: 574 DETLRWLDSNSLAEKDEIEAKDKELKSVCQSILTKMHQ 611


>Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.4 protein.
          Length = 645

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 21/38 (55%), Positives = 31/38 (81%)
 Frame = -1

Query: 318 NDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           ++T++WLDSN LA+K+E E K KEL+ VC  I+TK++Q
Sbjct: 574 DETLRWLDSNSLAEKDEIEAKDKELKSVCQSILTKMHQ 611


>Z81467-1|CAB03871.1|  643|Caenorhabditis elegans Hypothetical
           protein C12C8.1 protein.
          Length = 643

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = -1

Query: 327 DKCNDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           D   DT++W++ N LADK+E E K KEL+ +C  I+TK++Q
Sbjct: 571 DAVEDTLRWMERNTLADKDEIEAKDKELKSICQDILTKMHQ 611


>M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 4 gene, 3' end. ).
          Length = 288

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = -1

Query: 309 IKWLDSNQLADKEEYEHKQKELEGVCNPIITKLY 208
           I+WL SNQ A  EE + ++KELE V  PI++KLY
Sbjct: 235 IEWLGSNQDASTEENKEQKKELESVVQPIVSKLY 268


>AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock
           protein protein 4 protein.
          Length = 657

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = -1

Query: 309 IKWLDSNQLADKEEYEHKQKELEGVCNPIITKLY 208
           I+WL SNQ A  EE + ++KELE V  PI++KLY
Sbjct: 604 IEWLGSNQDASTEENKEQKKELESVVQPIVSKLY 637


>U56965-1|AAB52671.1|  661|Caenorhabditis elegans Heat shock protein
           protein 3 protein.
          Length = 661

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 333 IMDKCNDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           I +   + I WL SN  A  EE + ++K+LE    PI++KLY+
Sbjct: 599 IEEAVEEAISWLGSNAEASAEELKEQKKDLESKVQPIVSKLYK 641


>M26604-1|AAA28074.1|  661|Caenorhabditis elegans protein ( C.
           elegans BiP (hsp3)gene, complete cds. ).
          Length = 661

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 333 IMDKCNDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 205
           I +   + I WL SN  A  EE + ++K+LE    PI++KLY+
Sbjct: 599 IEEAVEEAISWLGSNAEASAEELKEQKKDLESKVQPIVSKLYK 641


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = -2

Query: 275 RKSMSTSRRNWRVFATRSSRSCTRXXXXXXXXXXXXXPGSLAEHPVREAQRPAEVPDPPS 96
           R+S S  RR+ R    R SRS  R               S +  PVRE++R +E   P  
Sbjct: 89  RRSRSPRRRS-RTPPRRRSRSRDRKRSRRSRSRSS----SRSRSPVRESRRRSESRSPSP 143

Query: 95  RRSTKHSTINNY 60
           +R    S  N Y
Sbjct: 144 KRDFHSSMRNQY 155


>U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical
           protein F56D2.5 protein.
          Length = 437

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 324 KCNDTIKWLDSNQLADKEEYEHKQKELEGVCN 229
           KCN +  WL S  L + + Y H  +  +G CN
Sbjct: 389 KCNASFCWLCSKTLNNVDPYSHYSE--KGSCN 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,670,107
Number of Sequences: 27780
Number of extensions: 74705
Number of successful extensions: 327
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)