Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O24
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   7.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   7.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   9.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   9.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 306 KWLDSNQLADKEEYEHKQKELEGV 235
           +WL  ++   + E+E   ++L+GV
Sbjct: 729 EWLYLHRARSESEFEMYHQQLQGV 752


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 106 SGTSAGRCASRTGCSAREP 162
           S + A +CAS T  +AR P
Sbjct: 744 SPSPAEQCASTTTITARSP 762


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 92  RSTKHSTINNY*RKLNVNLYDSNKRN*NLV 3
           + TK  + NNY  K   N Y+S K   N++
Sbjct: 299 KETKIISSNNYNYKNYNNNYNSKKLYYNII 328


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 92  RSTKHSTINNY*RKLNVNLYDSNKRN*NLV 3
           + TK  + NNY  K   N Y+S K   N++
Sbjct: 310 KETKIISSNNYNYKNYNNNYNSKKLYYNII 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,773
Number of Sequences: 438
Number of extensions: 846
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)