Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O23
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 37 0.002
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 37 0.002
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 36 0.002
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 36 0.003
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 27 1.4
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 2.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 4.3
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 4.3
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 25 7.5
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.5
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +3
Query: 69 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 224
++RK T++ RP +A++L+ + +P + ++++K GEMW++
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +3
Query: 69 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 224
++RK T++ RP +A++L+ + +P + ++++K GEMW++
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 36.3 bits (80), Expect = 0.002
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 75 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGEMWKSMK--DKS 239
++K + +PKRP SAY L+ + R +IK E G K V E+ K E W S+ D+
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166
Query: 240 IWXXXXXXXXXQYAKDLESYN 302
+ Y +++ +YN
Sbjct: 167 TYEEEASKLREAYEEEMAAYN 187
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 75 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 227
RKK+ T PKR MSA+M + RE++K+++P ++ G+ WK +
Sbjct: 9 RKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 388 LDLVGSAFLPFFPRFCAFLXXXXXXXPLALYDSKSLAY 275
+++ GS F F P F +F +A+ DS+SL Y
Sbjct: 224 INITGSVFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLY 261
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 93 TDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 218
TDKP + S + L+ E +S+HP + V + G E W
Sbjct: 119 TDKPSQSPSGNEVQVGLDMYNEGYRSDHPVIMVPGVISSGLESW 162
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 346 SEGKRARKQTPLNPRNRRKSLKMRKVKKTMRKATDL 453
S+GK + P + +N+R+ ++K+ +T +ATD+
Sbjct: 1107 SKGKAGKM--PASKKNKRQKGDVKKIDETKNEATDM 1140
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 275 LFFSLGCFLFPNTFIFH*FPHFTSFFGYFSDFQPRM 168
LF+ L C P F H T+F YF+ P +
Sbjct: 211 LFYDLNCQDIPEFFEDHMSEFMTAFLNYFTYTNPSL 246
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 96 DKPKRPMSAYMLWLNSAREQIKSE 167
D PK+ +AY+L LN + E KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 16 STSTVWLCTSSKIISKFL 69
ST T LC+S K++SKFL
Sbjct: 384 STHTGVLCSSLKLLSKFL 401
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,885
Number of Sequences: 5004
Number of extensions: 29611
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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