Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O22
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    26   3.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.1  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   5.4  

>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 445 TAMPLRLVFFFYKLIIIEIRSLQKLEIMSYHRQI 344
           + M  R++FFFY L+I E +S Q +   ++  QI
Sbjct: 185 SVMTKRVIFFFYALLIQEDKSKQIILQKAHEFQI 218


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 89  LRKYAVGNKFEE*VFKKSIAIA-LRSNERSIKREKGNCSSGALYICKRD 232
           LRK     K EE  FKK I  A L +NE+ +K  K N     L   ++D
Sbjct: 833 LRKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKD 881


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 525 VCY--PVSSLDN-DIIVDIFIPYRYNIYKARPCLYV 427
           +CY  PV +L   DI+  I  P +Y+ YK RP  YV
Sbjct: 261 ICYVKPVKNLRRLDIVFPI--PGQYHKYKCRPAEYV 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,115
Number of Sequences: 5004
Number of extensions: 42396
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)