Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O22
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0216 - 23691007-23691187,23691273-23691381,23691627-236917...    29   2.4  
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206...    28   4.1  
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    28   5.4  

>04_04_0216 -
           23691007-23691187,23691273-23691381,23691627-23691729,
           23691829-23691860,23692012-23692229,23692299-23692420
          Length = 254

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 425 SFFFL*INYYRN*EPSEIRNNVLPSTNLTNKYKT*SHSQ 309
           +F F+ +NYY     S    NVLPS  L N Y T  H++
Sbjct: 77  AFDFIGLNYYS----SSYAENVLPSYGLKNSYNTDFHAR 111


>05_06_0116 -
           25719030-25719458,25720138-25720301,25720390-25720643,
           25720727-25720782,25721032-25721169,25721315-25721421,
           25721502-25721681,25721757-25721852,25721926-25722007,
           25722084-25722425,25722666-25722695,25722788-25722880,
           25722963-25723040,25723122-25723222,25723833-25724058,
           25724647-25724760,25724855-25725009,25725515-25725554
          Length = 894

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 363 CLTIDKSDEQIQNVES*SSLVLYFIGRKIGRISEEETGEY 244
           CL +D SD++++ + S  +++ + +   I  + EE  G Y
Sbjct: 32  CLPLDSSDDELRELLSDGTVLCHIVNALIPGVLEESWGAY 71


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 406 IYRKKKLNVEAWPCFIYIISIWYKNIYYN 492
           +Y+K KL V++WP   Y    + +N+  N
Sbjct: 628 VYQKLKLQVKSWPLLAYHYCCFMENVISN 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,522
Number of Sequences: 37544
Number of extensions: 227548
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)