Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O22
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine re...    30   1.2  
Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical ...    28   4.8  
AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical ...    28   4.8  

>AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine
           receptor, class x protein39 protein.
          Length = 290

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 212 LYICKRDDYTSYSPVSSSEIRPIFLPIKYKTRLDYDSTFCIC----SSDLSMVRHYF*FL 379
           L IC     T +  +S + I  ++ P+ Y+       TFCI     S  L+++  +F  L
Sbjct: 83  LMICYSASTTFHFMISLNRILAVYKPMLYRMMFSVLFTFCIVMGIYSYALTIITLFFQIL 142

Query: 380 KAPNFYN 400
              NFY+
Sbjct: 143 GCQNFYD 149


>Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 448 STAMPLRLVFFFYKLIIIEIRSLQKLEIMSYHR 350
           ST +PL + +F + ++I+ I ++    +M  HR
Sbjct: 333 STHVPLLVAYFLFNMVIVSIAAMTTGIVMKVHR 365


>Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 448 STAMPLRLVFFFYKLIIIEIRSLQKLEIMSYHR 350
           ST +PL + +F + ++I+ I ++    +M  HR
Sbjct: 328 STHVPLLVAYFLFNMVIVSIAAMTTGIVMKVHR 360


>AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 448 STAMPLRLVFFFYKLIIIEIRSLQKLEIMSYHR 350
           ST +PL + +F + ++I+ I ++    +M  HR
Sbjct: 333 STHVPLLVAYFLFNMVIVSIAAMTTGIVMKVHR 365


>AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 448 STAMPLRLVFFFYKLIIIEIRSLQKLEIMSYHR 350
           ST +PL + +F + ++I+ I ++    +M  HR
Sbjct: 328 STHVPLLVAYFLFNMVIVSIAAMTTGIVMKVHR 360


>AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 448 STAMPLRLVFFFYKLIIIEIRSLQKLEIMSYHR 350
           ST +PL + +F + ++I+ I ++    +M  HR
Sbjct: 333 STHVPLLVAYFLFNMVIVSIAAMTTGIVMKVHR 365


>AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 448 STAMPLRLVFFFYKLIIIEIRSLQKLEIMSYHR 350
           ST +PL + +F + ++I+ I ++    +M  HR
Sbjct: 328 STHVPLLVAYFLFNMVIVSIAAMTTGIVMKVHR 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,578
Number of Sequences: 27780
Number of extensions: 229584
Number of successful extensions: 522
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)