Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O21
(188 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 77 4e-16
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 77 4e-16
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.007
SPBC216.06c |swi1||replication fork protection complex subunit S... 28 0.19
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi... 24 2.3
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 24 2.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 23 5.3
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 23 5.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 23 5.3
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 23 5.3
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 23 7.0
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 7.0
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 22 9.3
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 22 9.3
SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 22 9.3
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 22 9.3
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 22 9.3
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 22 9.3
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 22 9.3
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 76.6 bits (180), Expect = 4e-16
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +1
Query: 25 PARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
P +K+DL+ K IQRT+LMMG +E IED P+GNI GLVGVDQFLVK+GT
Sbjct: 420 PGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGT 468
Score = 23.0 bits (47), Expect = 5.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 3 IMGPNFQPGKK 35
I GPN+ PGKK
Sbjct: 413 IQGPNYVPGKK 423
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 76.6 bits (180), Expect = 4e-16
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +1
Query: 25 PARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
P +K+DL+ K IQRT+LMMG +E IED P+GNI GLVGVDQFLVK+GT
Sbjct: 420 PGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGT 468
Score = 23.0 bits (47), Expect = 5.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 3 IMGPNFQPGKK 35
I GPN+ PGKK
Sbjct: 413 IQGPNYVPGKK 423
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 32.7 bits (71), Expect = 0.007
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 7 WAPISSPARKEDLYEK-TIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
+ P P E K T++ LMMG+ + +E VP+GN+ + G+ +++T T
Sbjct: 488 YGPKYDPVNPEKHITKVTVESLYLMMGQELVYLETVPAGNVFAIGGLAGTVLRTAT 543
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.9 bits (59), Expect = 0.19
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 13 PISSPARKEDLYEKTIQRTILMMGRYVEAIEDVPSGN 123
P+S+PA L +K I R +L++ R + I+++ + N
Sbjct: 150 PLSTPAESRTLRDKGIIRIVLLLFRNILQIDELKTKN 186
>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
Tom20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 43 LYEKTIQRTILMMGRYVEAIEDVPS 117
+YE+T+ I+ + R ++A E +PS
Sbjct: 126 IYERTVPEPIMNLLRAMQAKESIPS 150
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 2.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 28 ARKEDLYEKTIQRTILMMGRYVEAIED 108
AR + L + TIQ + MM R+VEA D
Sbjct: 408 ARAKALEKNTIQIIVNMMTRWVEAYLD 434
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 114 GHILNGLHVTAHHEDGTLDGLLIQ 43
G+++NG V +HH+ L L+ Q
Sbjct: 573 GNVINGFIVRSHHDQLILKELMRQ 596
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 23.0 bits (47), Expect = 5.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 54 LLIQIFFSCRAGNWG 10
L++ I+F+C NWG
Sbjct: 512 LVVVIYFTCPPKNWG 526
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 19 SSPARKEDLYEKTIQRTILMMGRYVEA 99
S RK++LY + + R LM+ +EA
Sbjct: 614 SKSIRKDELYVERVSRFALMVKSAIEA 640
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.0 bits (47), Expect = 5.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 162 LNEELIDADQTANVTGGHILNGLH 91
+NEEL D+ + +LN +H
Sbjct: 804 MNEELSTTDEAVKLLANSVLNDVH 827
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 112 PSGNICGLVGVDQFLVKT 165
PSG CG G D+ L+ T
Sbjct: 91 PSGGFCGGNGQDEHLLST 108
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 22.6 bits (46), Expect = 7.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 122 TFAVWSASISSSLRLVPITTFK 187
TF+ +AS SSSL P TT K
Sbjct: 740 TFSHSNASTSSSLNAAPNTTAK 761
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 22.2 bits (45), Expect = 9.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 34 KEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
+ED+ I + RY ++ +G + L GVD + KT T
Sbjct: 532 EEDMVVAHIAEICVPCARYRLHVDGAVAGMLVLLGGVDNSISKTAT 577
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 18 FQPGKKRRFV*EDHPAYHPHDGP 86
F +++V + AY PHD P
Sbjct: 75 FDTTDHKKYVESSYAAYDPHDQP 97
>SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 89
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 2 YHGPQFPARQEKK 40
Y GP FPA EKK
Sbjct: 10 YCGPDFPAPLEKK 22
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 22.2 bits (45), Expect = 9.3
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 1 VSWAPISSPARKEDLYEKTIQRTILMMGRYVEAIEDV 111
VS+A ++P+RK +L ++ +RTI + V +EDV
Sbjct: 132 VSFALANTPSRKGNLVPQSPRRTIATTCKGV--LEDV 166
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 22.2 bits (45), Expect = 9.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2
Query: 85 GPS*GWYAGWSSH 47
GP W+ GWS++
Sbjct: 139 GPLAAWFTGWSNY 151
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 22.2 bits (45), Expect = 9.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 156 EELIDADQTANVTGGHILNGLHVTAHHEDGTLDGLLIQIFFSCRA 22
+ELI T + L G H H D G+LI FS +A
Sbjct: 163 QELIPQIGTGHYRAIETLFGCHSYGHEVDRWTFGILIAELFSNQA 207
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 115 SGNICGLVGVDQFLVKTGTNH 177
+G+IC L+GV L GT +
Sbjct: 112 AGSICNLIGVKLTLAIGGTGY 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 892,275
Number of Sequences: 5004
Number of extensions: 14568
Number of successful extensions: 51
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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