Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O21
(188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0103 + 1082077-1082167,1083037-1085477 64 2e-11
02_04_0017 + 18937774-18937864,18938505-18940945 64 2e-11
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 64 2e-11
01_06_0662 + 30987187-30987277,30987825-30990214 62 8e-11
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 31 0.098
03_05_0511 + 25056018-25059107 29 0.52
03_05_0060 + 20363857-20365359 27 1.6
02_05_0861 - 32302896-32303117,32303224-32303346,32303478-323036... 27 1.6
05_03_0498 - 14720989-14722119,14722225-14722839 25 6.4
06_01_0661 - 4807712-4807759,4807857-4807995,4808107-4808351,480... 25 8.5
05_06_0030 - 25060711-25060830,25060981-25061130,25061473-250615... 25 8.5
03_05_0059 - 20359480-20359552,20359690-20359777,20360255-203603... 25 8.5
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 25 8.5
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 25 8.5
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 63.7 bits (148), Expect = 2e-11
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +1
Query: 25 PARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
P +K+DLY K++QRT++ MG+ E++EDVP GN +VG+DQF+ K T
Sbjct: 418 PGQKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNAT 466
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 63.7 bits (148), Expect = 2e-11
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +1
Query: 25 PARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
P +K+DLY K++QRT++ MG+ E++EDVP GN +VG+DQF+ K T
Sbjct: 418 PGQKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNAT 466
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 63.7 bits (148), Expect = 2e-11
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +1
Query: 25 PARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
P K+DLY KT+QRT++ MG+ E+++DVP GN +VG+DQF+ K T
Sbjct: 420 PGEKKDLYVKTVQRTVIWMGKKQESVDDVPCGNTVAMVGLDQFITKNAT 468
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 3 IMGPNFQPGKKR 38
IMGPNF PG+K+
Sbjct: 413 IMGPNFVPGEKK 424
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 61.7 bits (143), Expect = 8e-11
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +1
Query: 13 PISSPARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
P +P +K+DLY K +QRT++ MG+ E++E VP GN +VG+DQF+ K T
Sbjct: 410 PNYAPGQKKDLYVKNVQRTVIWMGKKQESVEGVPCGNTVAMVGLDQFITKNAT 462
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 31.5 bits (68), Expect = 0.098
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 22 SPARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
SP +ED+ K + + + RY I P+G+ + GVD ++KT T
Sbjct: 539 SPDDEEDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTAT 588
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +1
Query: 13 PISSPARKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGT 171
P+ A ++ + E +Q M+G+ + + V +GN+ + G+ ++K+ T
Sbjct: 465 PMKGEAMQKHVQEVELQYLYEMLGQGLRPVSSVCAGNVVAIQGLGHHILKSAT 517
>03_05_0060 + 20363857-20365359
Length = 500
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 132 TANVTGGHILNGLHVTAHHEDGTLDGLL 49
+AN TG ++G+H HH G ++G L
Sbjct: 240 SANQTGNSFVDGIHGENHHSIGEVNGNL 267
>02_05_0861 -
32302896-32303117,32303224-32303346,32303478-32303666,
32303755-32304108
Length = 295
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 4 SWAPISSPARKEDLYEKTIQRTILMMGRYVEAIE 105
+W I+ P + DL KT+Q + M YV++++
Sbjct: 203 AWELINEPRCQSDLSGKTLQAWVTEMAGYVKSVD 236
>05_03_0498 - 14720989-14722119,14722225-14722839
Length = 581
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 150 LIDADQTANVTGGHILNGLHVTAHHEDGTLDG 55
L+DAD T N G ++N GT+DG
Sbjct: 507 LVDADGTVNEAGQRLVNLRREWTSDARGTIDG 538
>06_01_0661 -
4807712-4807759,4807857-4807995,4808107-4808351,
4808482-4808800,4809140-4809364,4809453-4809619,
4809702-4809818,4809903-4810076,4810173-4810268,
4810351-4810567,4810663-4810781,4810931-4811123,
4811207-4811358,4811448-4811568,4811980-4812074
Length = 808
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 105 LNGLHVTAHHEDGTLDGLLIQIFFSCR 25
++GLH+ +H D D +L+ F C+
Sbjct: 702 VSGLHIDPYHSDKAAD-ILVNFFEKCK 727
>05_06_0030 -
25060711-25060830,25060981-25061130,25061473-25061544,
25061631-25061761,25062487-25062635,25062998-25063239
Length = 287
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 101 LRMCPPVTFAVWSASISSS 157
L CPPV W ++SSS
Sbjct: 19 LMKCPPVVSHAWQGAVSSS 37
>03_05_0059 -
20359480-20359552,20359690-20359777,20360255-20360326,
20361765-20361963
Length = 143
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 67 TILMMGRYVEAIEDVPSGNICGLVGVDQ----FLVKTGTNH 177
T +M RY+E + +P+G + GL + F + TG NH
Sbjct: 97 TYVMGQRYLETSKIMPAGVVAGLSALMSAFYLFKIATGGNH 137
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 168 TSLNEELIDADQTANVTGGHILNGLHVTAH 79
T++ LI +A + HIL GLH+T +
Sbjct: 1690 TNVKHHLILNPSSAPIDSEHILGGLHMTVN 1719
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 1 VSWAPISSPARKEDLYEKTIQRTILMMGRYVEAIE 105
++W ++ P + DL +T+Q I M +V++I+
Sbjct: 203 LAWELMNEPRCQSDLSGRTVQSWITEMAAHVKSID 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,267,715
Number of Sequences: 37544
Number of extensions: 113008
Number of successful extensions: 293
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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