Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O19
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    80   2e-16
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    26   4.1  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   5.4  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   5.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   5.4  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   9.5  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   9.5  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 38/104 (36%), Positives = 61/104 (58%)
 Frame = +2

Query: 8   VTVQQIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXXXXXXXXXXXX 187
           + + ++   E+    +I +N  VY+K  +LS+AK+INGLRA+F E Y             
Sbjct: 646 IPIDKLLLVENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDI 705

Query: 188 EDLVKNPDVPIGFETSVEFCGGSHLHRTGHIGEYVIVSEEGIAK 319
           + L++ P  P   + S+EFCGG+H  ++G I ++VI+ E GIAK
Sbjct: 706 DTLLQEPKKPDWTKYSIEFCGGTHCDKSGEIKDFVILEENGIAK 749



 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 279 LENMLLLAKRE*PKGIRRIVALTGPEA 359
           +++ ++L +    KGIRRIVA+T  EA
Sbjct: 736 IKDFVILEENGIAKGIRRIVAVTSTEA 762


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 2   HEVTVQ---QIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEH 145
           H+V V    ++K +   + EI  E  +      SLS  + + GLR + D H
Sbjct: 292 HDVNVSYMLKLKASRSLLSEIKKEKSVFPFHFGSLSSERNLLGLRELTDRH 342


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 408 IANYIKEQNEINQKEITKN-IVNLTND 485
           +A Y++EQN I+ K   K  IV LTN+
Sbjct: 826 LARYVREQNNISLKTPLKTLIVILTNE 852


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 247 TKFYRCFETDRNIWVFYQIFNR 182
           TK +R  + +  +WVF Q+FN+
Sbjct: 157 TKVFRSRDYNNLLWVFKQLFNK 178


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 335 CRINGTRSIKGYKQSSCFRKR 397
           C ING R  K + + +C +KR
Sbjct: 615 CSINGIRYGKSHNEDTCIKKR 635


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 229 FETDRNIWVFYQIFNRYTYRHYSNWVRV----VFIKHCTQPIN 113
           F+ D   WVF  +FN +   + SN V +     F++ C +PIN
Sbjct: 195 FDLDSGKWVFKSLFNHHCGIYRSNCVVINKDSEFLQMC-RPIN 236


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 126 RNPLIFFASLRLVCF 82
           RNPLIF A+ + +CF
Sbjct: 328 RNPLIFGAAFQSICF 342


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 126 RNPLIFFASLRLVCF 82
           RNPLIF A+ + +CF
Sbjct: 328 RNPLIFGAAFQSICF 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,040
Number of Sequences: 5004
Number of extensions: 30827
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)