Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O19
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528...    73   1e-13
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...    36   0.027
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   5.5  
10_08_0871 - 21181798-21181917,21182024-21182065,21182162-211821...    27   9.6  

>10_02_0098 +
           5286827-5287019,5287380-5287476,5287872-5287992,
           5288458-5288511,5288868-5288918,5289004-5289099,
           5289709-5289807,5289989-5290111,5290666-5290809,
           5290902-5290973,5291053-5291128,5291208-5291350,
           5291453-5291561,5291629-5291816,5292045-5292134,
           5292256-5292438,5293187-5293360,5293466-5293537
          Length = 694

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/104 (34%), Positives = 55/104 (52%)
 Frame = +2

Query: 8   VTVQQIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXXXXXXXXXXXX 187
           V  + ++  E  + + I +   V+A+   L++AK+INGLRA+F E Y             
Sbjct: 379 VQPEDLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKV 438

Query: 188 EDLVKNPDVPIGFETSVEFCGGSHLHRTGHIGEYVIVSEEGIAK 319
           EDL+ NP+       S E CGG+H+  T     + ++SEEGIAK
Sbjct: 439 EDLLANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAK 482



 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +3

Query: 282 ENMLLLAKRE*PKGIRRIVALTGPEALKAIXXXXXXXXXXXXIANYIKEQNEINQKEITK 461
           E   LL++    KG+RRI A+T   A  AI            I + I E +++    + K
Sbjct: 470 EAFALLSEEGIAKGVRRITAVTAKHASDAI-------KDASSIDSEINEASKLEGAILEK 522

Query: 462 NIVNLTNDISQAQISYWNKEELR 530
            I ++ + +  A I    K +L+
Sbjct: 523 TIASIKSKLDTALIPAARKADLK 545


>06_01_0977 +
           7585817-7585970,7586057-7586146,7586500-7586702,
           7587274-7587452,7587913-7587991,7588403-7588537,
           7588651-7588800,7588887-7588997,7589084-7590004,
           7590351-7590623,7590853-7591062,7591425-7591573,
           7591716-7592052
          Length = 996

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 233 SVEFCGGSHLHRTGHIGEYVIVSEEGIA 316
           S+E CGG+H+  T  I  + I+SE+GIA
Sbjct: 775 SMELCGGTHVSNTAEIRGFKIISEQGIA 802


>06_03_0099 + 16633928-16638213,16638299-16638386,16638823-16638950,
            16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 269  TGHIGEYVIVSEEGIAKRDTTHCRINGTRSIKGYKQSS 382
            T H+G++V    +G++  DTT  R N    ++G  +SS
Sbjct: 995  TFHVGQFVGEVRKGVSDADTTLTRKNDKSIMEGIARSS 1032


>10_08_0871 -
           21181798-21181917,21182024-21182065,21182162-21182191,
           21182227-21182328,21182414-21182512,21182824-21182884,
           21183447-21183568,21183673-21183758,21183880-21183964,
           21184125-21184208,21184292-21184371,21184722-21184785,
           21184859-21184927,21185263-21185343,21185438-21185578
          Length = 421

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 206 PDVPIGFETSVEFCGGSHL-HRTGHIGEYVIVSEE 307
           P+V IGF          +L H TGH+GEY+ ++ E
Sbjct: 178 PEVHIGFHPDA--AASFYLSHLTGHVGEYLALTGE 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,828,087
Number of Sequences: 37544
Number of extensions: 172935
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)