Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O19
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna syn...   105   2e-23
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    33   0.100
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    33   0.100
U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine rece...    27   8.6  

>U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna
           synthetase protein 2 protein.
          Length = 968

 Score =  105 bits (252), Expect = 2e-23
 Identities = 51/104 (49%), Positives = 65/104 (62%)
 Frame = +2

Query: 8   VTVQQIKNTEDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXXXXXXXXXXXX 187
           +TVQQ+K  E+  +++I+    VYAK++ L EAKK+ GLRAMFDE Y             
Sbjct: 645 MTVQQVKKAEEYAQQLIDTKGQVYAKNSPLGEAKKVKGLRAMFDETYPDPVRVVAVGTPV 704

Query: 188 EDLVKNPDVPIGFETSVEFCGGSHLHRTGHIGEYVIVSEEGIAK 319
           E L++NPD   G  T+VEFCGG+HL    HIG  VI SEE IAK
Sbjct: 705 EQLLQNPDAEEGQNTTVEFCGGTHLQNVSHIGRIVIASEEAIAK 748



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
 Frame = +3

Query: 318 KGIRRIVALTGPEALKAIXXXXXXXXXXXXIANYIKEQNEI--NQ---KEITKNIVNLTN 482
           KGIRRIVALTGPEA +AI             + +  +++E+  N+   K + K I  + +
Sbjct: 748 KGIRRIVALTGPEAERAIARADRLTARLEEESKHADKKDELLANKDKFKALQKKIQEIVD 807

Query: 483 DISQAQISYWNKEELR 530
           + + AQ+ YW K+ +R
Sbjct: 808 EANGAQLPYWRKDSIR 823


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 33.5 bits (73), Expect = 0.100
 Identities = 27/96 (28%), Positives = 40/96 (41%)
 Frame = +2

Query: 35  EDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXXXXXXXXXXXXEDLVKNPDV 214
           E +++E I          TSL EAKKI  L++   E                 L    DV
Sbjct: 647 EMKMREFIQNGGFTEIIETSLEEAKKIENLQSDVKEDRIGGASVRVVA-----LGSGADV 701

Query: 215 PIGFETSVEFCGGSHLHRTGHIGEYVIVSEEGIAKR 322
           P      VE C G+H+H    I +  I+S++ + +R
Sbjct: 702 P------VECCSGTHIHDVRVIDDVAIMSDKSMGQR 731


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 33.5 bits (73), Expect = 0.100
 Identities = 27/96 (28%), Positives = 40/96 (41%)
 Frame = +2

Query: 35  EDQIKEIINENKIVYAKHTSLSEAKKINGLRAMFDEHYXXXXXXXXXXXXXEDLVKNPDV 214
           E +++E I          TSL EAKKI  L++   E                 L    DV
Sbjct: 647 EMKMREFIQNGGFTEIIETSLEEAKKIENLQSDVKEDRIGGASVRVVA-----LGSGADV 701

Query: 215 PIGFETSVEFCGGSHLHRTGHIGEYVIVSEEGIAKR 322
           P      VE C G+H+H    I +  I+S++ + +R
Sbjct: 702 P------VECCSGTHIHDVRVIDDVAIMSDKSMGQR 731


>U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein201 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 220 RFRNICRILWRFPFTSHWSYWR 285
           RF  IC   W+     HWS+WR
Sbjct: 129 RFYTICTFSWK----KHWSFWR 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,364
Number of Sequences: 27780
Number of extensions: 172251
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)