Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O18
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 30 0.19
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 26 3.1
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 4.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 7.2
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.2
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 9.5
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 9.5
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 9.5
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 30.3 bits (65), Expect = 0.19
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Frame = +2
Query: 119 LLGKYPNIKLRTTDKDFIAESKIWLAKL-----FEQVSPLLFGNGGPIILVQVENEYG-- 277
++G +P+ + +DK IAE K++L+ L F Q P+ + + L + E EY
Sbjct: 172 VMGDWPSRYITMSDKFEIAELKVFLSLLQKDLIFRQNKPVYWSSSSRSALAESEIEYDDN 231
Query: 278 --SYDSDMPYKIQMRDIIS-EHVGDKALLYTTDGPQLVRAGMIPGVHATVDFGI 430
S + + I E+ KAL++TT P + + + H +++G+
Sbjct: 232 HVSTSIYFTFPVNSFSIDGCEYNNVKALVWTTT-PWTIPSNLALSYHPEINYGL 284
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 3.1
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Frame = +2
Query: 26 IRTAAEEGLHVLLRVGPYICAERDLGGFPYWLLGKYPNIKLRTTDKDFIAESKIWLAKLF 205
I+ AA LH L + +C + L L + N D + + W+ +F
Sbjct: 275 IQFAAHVSLHTLCKA---LCGQACLMIRDLNLHRESANADFSNKDAE-LRRRVFWICYIF 330
Query: 206 EQVSPLLFGNGGPIILVQVE-----NEYGSYDSDMP 298
E + L+FG + + ++ EYG Y S+MP
Sbjct: 331 EITTSLVFGTPSVLSDMDIDCEHPNYEYGRYFSEMP 366
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = +3
Query: 3 TRETLPSSFER---RQKKACMYCF 65
+RET P S R R+KK C++CF
Sbjct: 1077 SRETSPDSEGRLTIRKKKGCIFCF 1100
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 198 FANHILDSAMKSLSVVLNFMFGY 130
F H DS + + V++F+FGY
Sbjct: 149 FMQHFQDSRLVLYTAVMSFLFGY 171
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 7.2
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -2
Query: 361 CIEKGFVSYVF*YYITHLYLVWHVTI-ITTILVFHLNQDN--RSTVAK**WRHLFEQLC* 191
C+ GF SY+F + +L+ + V + I I + L N ++T W +
Sbjct: 195 CVTSGFFSYLFINALYYLFAIIFVPLGIWDIAEYPLMMGNVSKTTSVNDFWSRDWHVCTK 254
Query: 190 PYFR 179
PYFR
Sbjct: 255 PYFR 258
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +1
Query: 391 DDSWRSRNCRLWYYFRTYARIQHITKIQAAAWTSYEFRI 507
DD+WRS+ Y + + H+ ++ S +F I
Sbjct: 53 DDTWRSKRWEFDYQYSGISTFAHLPHVRCLVEQSEDFDI 91
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 489 GPGSGLYLRNVLNSRIGSEVIP 424
GPGSG L + L S+I S +P
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMP 138
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 255 TRIIGPPLPNNNGDTCSNSFANHILDSAMKSL 160
++I PP+P+N+ SN N +++ KS+
Sbjct: 343 SKISLPPVPSNSSSQRSNVSLNSLIECPYKSM 374
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 119 LLGKYPNIKLRTTDKDF---IAESK---IWLAKLFEQVSPLLFGNGGPIILVQVENEY 274
L+ K N+ +TDKD +AE W+ +FE + L+FG + +++E +Y
Sbjct: 293 LMVKDLNLHKESTDKDLDQDMAELHRRIFWVCYIFETTTSLIFGTPPVLGDLEIECKY 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,680
Number of Sequences: 5004
Number of extensions: 56303
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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