Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O18
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical p... 161 2e-40
AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical ... 106 9e-24
AF045643-2|AAC02596.2| 663|Caenorhabditis elegans Hypothetical ... 32 0.30
U00032-12|AAA50629.1| 482|Caenorhabditis elegans Hypothetical p... 29 2.1
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 29 2.8
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 29 2.8
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 29 2.8
AC024200-11|AAF36000.1| 271|Caenorhabditis elegans Hypothetical... 27 8.6
>Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical
protein T19B10.3 protein.
Length = 653
Score = 161 bits (392), Expect = 2e-40
Identities = 86/183 (46%), Positives = 113/183 (61%), Gaps = 7/183 (3%)
Frame = +2
Query: 11 DIAKFIRTAAEE-GLHVLLRVGPYICAERDLGGFPYWLLGKYPNIKLRTTDKDFIAESKI 187
D A+F A + GL +LRVGPYIC E + GG P+WLL K K R++D+ F E +
Sbjct: 113 DFAEFSMMAFHKYGLWTILRVGPYICGELENGGLPWWLLNKNVT-KQRSSDRVFTREVEN 171
Query: 188 WLAKLFEQVSPLLFGNGGPIILVQVENEYGSYDS-DMPYKIQMRDIISEHVGDKALLYTT 364
W L +V PLL NGGP++++Q+ENEYGSYD+ D Y +RD+ VGD LL+TT
Sbjct: 172 WFEILLPRVKPLLRKNGGPVLMLQIENEYGSYDACDQQYLRFLRDLTRSLVGDDVLLFTT 231
Query: 365 DG--PQLVRAGMIPGVHATVDFGIT---SEPMREFNTLRRYRPLPGPLMNSEFYPGWLTH 529
DG L++ G + GV TVDFG T E F R++ P GPL+NSE+YPGWL
Sbjct: 232 DGSAESLLKCGTVEGVFPTVDFGPTDDAKEIENNFKLQRKFAP-NGPLVNSEYYPGWLVL 290
Query: 530 WGE 538
WG+
Sbjct: 291 WGQ 293
>AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical
protein H22K11.2 protein.
Length = 644
Score = 106 bits (255), Expect = 9e-24
Identities = 56/183 (30%), Positives = 100/183 (54%), Gaps = 7/183 (3%)
Frame = +2
Query: 11 DIAKFIRTAAEEGLHVLLRVG--PYICAERDLGGFPYWLLGKYPNIKLRTTDKDFIAESK 184
D+ KFI+ A GL+ +LR+G PYI AE D GG P+WL+ K R++D F+ E
Sbjct: 98 DLVKFIKAAESNGLYTILRIGNRPYISAEWDNGGLPWWLIRNTKIGKYRSSDPSFMTEVT 157
Query: 185 IWLAKLFEQVSPLLFGNGGPIILVQVENEYGSYD-SDMPYKIQMRDIISEHVGDKALLYT 361
W L ++ PL+ N GP+++VQ+E+ YG+ D Y +Q+ ++ E++G+ +L+T
Sbjct: 158 QWWKHLLPKIYPLMRKNAGPVLMVQIEHFYGALGICDQQYLLQLANMAKENLGNDVVLFT 217
Query: 362 TDGP--QLVRAGMIPGVHATVDF--GITSEPMREFNTLRRYRPLPGPLMNSEFYPGWLTH 529
+ P Q +R G +P + T++ + + + ++++ P + S+F
Sbjct: 218 VNPPVLQFMRCGTLPNILPTIEIVPNANAGEIESWFSMQKAFMQGAPAVASQFLINPFKL 277
Query: 530 WGE 538
WG+
Sbjct: 278 WGK 280
>AF045643-2|AAC02596.2| 663|Caenorhabditis elegans Hypothetical
protein F58H7.7 protein.
Length = 663
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 137 NIKLRTTDKDFIAESKIWLAKLFEQVSPLLFGNGGPIILVQVENEYGSYDSD 292
++K +T D + E I KLFE++ PLL P+ + + N Y D D
Sbjct: 574 SLKFKTGDLELGCEDNI---KLFEEIKPLLHLTSFPLNYISLYNSYNLRDED 622
>U00032-12|AAA50629.1| 482|Caenorhabditis elegans Hypothetical
protein F37A4.1 protein.
Length = 482
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 98 LGGFPY-WLLGKYPNIKLRTTDKDF 169
+GGFP WL YPN+K D F
Sbjct: 302 IGGFPVAWLASNYPNVKAVVLDATF 326
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 146 TLCLDIFLEASKEIHLNLFQRKCTGLLEAVHAG 48
T+C+D+ E ++++ L Q+ T +EAV +G
Sbjct: 370 TVCIDVLQEKLAQMYMALLQKLLTEYMEAVKSG 402
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 146 TLCLDIFLEASKEIHLNLFQRKCTGLLEAVHAG 48
T+C+D+ E ++++ L Q+ T +EAV +G
Sbjct: 370 TVCIDVLQEKLAQMYMALLQKLLTEYMEAVKSG 402
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 146 TLCLDIFLEASKEIHLNLFQRKCTGLLEAVHAG 48
T+C+D+ E ++++ L Q+ T +EAV +G
Sbjct: 370 TVCIDVLQEKLAQMYMALLQKLLTEYMEAVKSG 402
>AC024200-11|AAF36000.1| 271|Caenorhabditis elegans Hypothetical
protein Y71F9AL.6 protein.
Length = 271
Score = 27.1 bits (57), Expect = 8.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 325 YYITHLYLVWHVTIITTILV 266
Y+I H+Y ++H+ II T+ +
Sbjct: 58 YHIHHIYQIYHIHIINTLYI 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,616
Number of Sequences: 27780
Number of extensions: 324832
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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