Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O16
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   270   7e-74
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   270   7e-74
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    30   0.28 
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    29   0.37 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.1  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   2.6  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.1  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   6.1  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.0  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   8.0  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   8.0  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  270 bits (663), Expect = 7e-74
 Identities = 123/168 (73%), Positives = 144/168 (85%)
 Frame = +3

Query: 72  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 251
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEK
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEK 64

Query: 252 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 431
           IA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG
Sbjct: 65  IACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 124

Query: 432 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 575
           +DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+QKYD ++L
Sbjct: 125 MDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  270 bits (663), Expect = 7e-74
 Identities = 123/168 (73%), Positives = 144/168 (85%)
 Frame = +3

Query: 72  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 251
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEK
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEK 64

Query: 252 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 431
           IA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIYG
Sbjct: 65  IACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 124

Query: 432 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 575
           +DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+QKYD ++L
Sbjct: 125 MDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 548 KPLHGVFFCQTMGESNFASLTSSMSYIETWSTKNNVEIQTIDTNRWIIFDTQID 387
           KP +  +  Q  G+ +  S   S  Y+ + +   NVE ++ID  + I+FD  +D
Sbjct: 708 KPTYAQYLEQLWGDMSDFSTHLSFYYLCSINLMENVEEESIDKIKDILFDIHVD 761


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -1

Query: 400 IPKSMCSWIPKPKLPVAEKLSRLNSYSLTFNPLSRISSALAPRTVQWTAIFSLRRIPKD 224
           I  S+C WI    LP+ +K +      + FNP+S  +  L         +FS  + P D
Sbjct: 81  IDPSICKWILDTYLPLFKKSNNAYPSKIAFNPISNTTLVLFLTECCNIYLFSENKKPVD 139


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = -3

Query: 356 CGREVITSQFIFSYFQSSLKDFLSLSTSNSAMDSNLFITTNTKRPYSVSGL*EYRLLAGK 177
           CG E I  QF  +   +   D  ++S+ N+A+D    I       + +S   ++ + A  
Sbjct: 603 CGTETIIRQFAMNLVMTVTNDKQAVSSKNAALDLISLIVNKVLALFDLSLFEKHNIPAPT 662

Query: 176 LFQHLSGTS*PITRFSD 126
            F  +      ITR ++
Sbjct: 663 NFNDIISFIPSITRLNE 679


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 578 VQDYTIVFLLKPLHGVFFCQTMGE 507
           + D+ +  LL+PL  VF C T G+
Sbjct: 40  MDDFNLENLLRPLQCVFICSTTGQ 63


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 96  HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 239
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 544 HFMASSFVKRWGNPTLPVL-RLL*ATLKPGRPRTT*KSKP 428
           ++ ASSF ++  N T P+  ++  A+LKP  PRT+  S P
Sbjct: 131 NYSASSFERQ--NRTAPLQSKVTTASLKPNIPRTSMSSSP 168


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 419 WYLWFGFLRCSWSTRF 466
           W  WFGF   SW   F
Sbjct: 242 WKRWFGFKSVSWKNSF 257


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -1

Query: 382 SWIPKPKLPVAEKLSRLNS-YSLTFNPLSRISSALAPRTVQWTAIFSLRRIPKDLTVYLA 206
           S+  K   P     S L+S  + T   L R  + L+  T++  A+  L   PKD+T+   
Sbjct: 186 SYRTKSASPALIDTSTLDSRLNFTMGRLERSIAQLSKNTMR--AVSHLENPPKDITLPKL 243

Query: 205 FENTGCWPVSCSSTLAARVSLSPDS 131
                 WP+   S  A     S  S
Sbjct: 244 NVKNSAWPLQPYSPPANETPASSSS 268


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 461 WSTKNNVEIQTID-TNRWIIFDTQIDVFL 378
           W+    +E+   D +NRW+ F+  +DVFL
Sbjct: 88  WNKGECIELVLRDASNRWLPFEFVMDVFL 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,632
Number of Sequences: 5004
Number of extensions: 55290
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)