Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O16
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   292   1e-79
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   290   5e-79
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   1.0  
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   3.2  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  292 bits (716), Expect = 1e-79
 Identities = 135/168 (80%), Positives = 152/168 (90%)
 Frame = +3

Query: 72  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 251
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 252 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 431
           IAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134

Query: 432 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 575
           +DFYVVL R G  +A RRR  G+VG  HR+ +E+++KWFQQKYDGIIL
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  290 bits (711), Expect = 5e-79
 Identities = 134/167 (80%), Positives = 149/167 (89%)
 Frame = +3

Query: 75  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 254
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 255 AVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 434
           AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76  AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135

Query: 435 DFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIIL 575
           DFYVVL R G  V+ RRR  G++G  HR+ KE+ +KWFQQKYDGIIL
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 267 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 425
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 408 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 530
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
 Frame = -3

Query: 545 PLHGVFFCQTMGESNFASLTSSMSYIETWSTKNNVEIQTIDTNRWIIFDTQIDVFLDTKA 366
           P++G   CQ+       + T+  S   T ST     I+T  +   ++FD+         A
Sbjct: 92  PIYGAI-CQSNNFYEVVANTTGFSNTPT-STTTCAYIKTSSSG--LVFDS-----CSIDA 142

Query: 365 KVACGREVITSQFIFSYFQ-SSLKDFLSLSTSNSAMDSNLFITTNTKRPYSVS 210
            V C R +    +       SS   FLS +T  S+  SN+ +T+++ + YS S
Sbjct: 143 NVLCDRPLQKQDYCSIIANCSSTTTFLSTTTPVSSTTSNISLTSSSTQSYSSS 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,374
Number of Sequences: 27780
Number of extensions: 308917
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)