Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O15
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...   135   5e-33
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    29   0.33 
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   1.3  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   2.3  
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c...    26   4.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.2  

>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score =  135 bits (326), Expect = 5e-33
 Identities = 58/103 (56%), Positives = 77/103 (74%)
 Frame = +3

Query: 201 QKRFKNSRRNYGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDPDEGIRFRGLSIPECQQQ 380
           Q   K  R  +G   +GEVT++ MYGG RG++ L+WE SVLDP+EGIRFRG +IPECQ+ 
Sbjct: 54  QAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLDPNEGIRFRGYTIPECQKL 113

Query: 381 LPKAKGGEEPLPEGLFWLLVTGEIPTEAQVKALSKGMGSKGRI 509
           LP +  G++PLPE LFWLLVTGEIPT +QV+ALS    ++ ++
Sbjct: 114 LPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARSQL 156


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +3

Query: 201 QKRFKNSRR---NYGSTKVGEVTVDMMYGGMRGI---KGLVWETSVLDPDEGIRFRGLSI 362
           Q R KN R    N+   K+    +D   G +      K L+ +  V DP  G+R     I
Sbjct: 271 QMRGKNGRSIKSNFRQYKLSPFFLDTFTGDVTNCPLRKNLLLDAIVCDPPYGVRAGAKKI 330

Query: 363 PECQQQLPK 389
            +C Q+ PK
Sbjct: 331 AKCSQRPPK 339


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = -1

Query: 502 PFEP-----IPLDKAFTCASVGISPVTRSQNRPSGRGSSPPLALGNC--CWHSGMDKPRN 344
           PF P     + L ++ +  S+  +    + N  SG  SSP  +L N      S    P+ 
Sbjct: 66  PFSPSKATTVSLKESASLTSLSNNKSVSNLNSISG-ASSPSGSLVNLHSLTRSASFVPQP 124

Query: 343 RIPSSGSKTEVSQTRPLIPRMPPY 272
            +P+SG  +    +R ++ R PP+
Sbjct: 125 SVPNSGQLSNADMSRHILARFPPF 148


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 348 RGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGEIP 455
           +G  +PE +  LP    G    P G+FWL  TG  P
Sbjct: 377 KGRPVPEAR--LPSMMIGCIVFPIGIFWLAWTGNYP 410


>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 302 KTLNTTHASVHHIDGHFSYFCGTIIPAGILKSFLVP 195
           K+ N  + SV  I+G        I  AGILKS ++P
Sbjct: 7   KSANDLYESVRSIEGVTGVHLFRIRDAGILKSTMIP 42


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 291  YHACLRTSYRRSXXXXLWNH 232
            YH+ L   YR+S     WN+
Sbjct: 1819 YHSALLNDYRKSVIMSAWNY 1838


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 337  PSSGSKTEVSQTRPLIPRMPPYIISTVTSPTFVEP 233
            P S     VS TRP IP+ PP   +  +S     P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,043
Number of Sequences: 5004
Number of extensions: 47797
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)