Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O14
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    29   0.32 
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   1.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   6.8  

>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -2

Query: 166 YLYTHWMRTMSVAILSLPVPAPKKRLSLHAYSVTGCNATCDRCDQQNLRRWENL 5
           Y Y  W + + V ++SL      K + + A  +  C   C +  +  L++WEN+
Sbjct: 129 YFYETWTKAVKVTVISL-----AKCVKVTAIFLAQCVKACGKGIKHFLKKWENM 177


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -2

Query: 151 WMRTMSVAILSLPVPAPKKRLSLHAYSV 68
           W++++ +++L L +P PK+ ++L   S+
Sbjct: 590 WLKSLFLSLLDLVIPNPKENITLPVQSL 617


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 73   SVTGCNATCDRCDQQNLRRWENL 5
            SVT  +   D C Q +LRRW+ L
Sbjct: 2675 SVTEFSRIIDECMQFSLRRWQQL 2697


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 439 PTIFEIDISQLITPSTVRKSFKSVVRRANSS 347
           PTI   DI    TP+T   S  ++++RA +S
Sbjct: 32  PTILADDIVHGYTPATYLSSVPTLLKRATTS 62


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 205 VGIRFAFISKSRLYLYTHWM 146
           VG++F+F + S LYL T +M
Sbjct: 366 VGLKFSFQTASDLYLITDYM 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,947
Number of Sequences: 5004
Number of extensions: 35837
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)