Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O14
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0110 + 18058821-18058900,18059119-18059182,18059351-180594... 31 0.54
05_01_0260 - 1993075-1994312,1996249-1997191 30 0.72
04_04_1162 - 31383886-31384644 29 2.2
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 29 2.2
05_04_0153 + 18536874-18537266,18537369-18537436,18537511-185377... 28 2.9
05_03_0007 - 7318113-7318292,7319984-7320046,7320138-7320304,732... 28 2.9
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 28 2.9
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 27 5.1
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 6.7
02_03_0229 + 16617371-16617970 27 6.7
11_06_0368 + 22756988-22758205 27 8.8
04_03_0513 - 16681227-16683936,16685572-16685966 27 8.8
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 27 8.8
01_01_0098 + 744582-745380,746107-746130,746500-747569 27 8.8
>05_04_0110 +
18058821-18058900,18059119-18059182,18059351-18059437,
18059521-18059598,18060105-18060201,18060817-18060860,
18061071-18061257,18061324-18061406
Length = 239
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = -2
Query: 334 GSFYTLKGSWTFQKQGE-WIFVSSSNP-YCDLGCTEHGTITRNHSVGIRFAFISKSRLYL 161
G++Y + W F + W+ + + Y C T N +G+ + +YL
Sbjct: 151 GTWYAIISCWAFMPDSKGWVLATVIDKFYATNTCINQRNKTSNIVIGLILTYSMSVGVYL 210
Query: 160 YTHWMR 143
Y W R
Sbjct: 211 YAEWAR 216
>05_01_0260 - 1993075-1994312,1996249-1997191
Length = 726
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 274 VSSSNPYCDLGCTEHGTITRNHSVGIRFAFISKSRLYLYTHWMR 143
V+ NPY +LGC++ IT G+ ++ + L W R
Sbjct: 299 VTDGNPYVNLGCSDDPGITIGIGCGLGSIILALGAIVLINKWKR 342
>04_04_1162 - 31383886-31384644
Length = 252
Score = 28.7 bits (61), Expect = 2.2
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -2
Query: 241 CTEHGTITRNHSVGIRFAFISKSRLYLYTHWMRTMSVAILSLPVPAPKKRLSLHAYSVTG 62
C H T+ R H V +R L + +R S A+ +P P P K Y+ G
Sbjct: 17 CLHHTTVLRRH-VYVRLQLGPTRELRGGANAVRC-SAAVHEIPAPIPLK--PERKYAPRG 72
Query: 61 CNATCDRCDQQNLRRWE 11
N T C +R W+
Sbjct: 73 PNRTRTHCHVGPMRAWD 89
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = -2
Query: 223 ITRNHSVGIRFAFISKSRLYLYTHWMRTMSVAILSL 116
+TR H++G+ +F+S + ++Y ++ S+++ +L
Sbjct: 350 VTRGHALGVWVSFLSLTIFHMYANYKAVQSLSLTTL 385
>05_04_0153 +
18536874-18537266,18537369-18537436,18537511-18537721,
18537918-18538036,18538103-18538172,18538260-18538331,
18538472-18538585,18540633-18540698
Length = 370
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 334 GSFYTLKGSWTFQKQGEWIF 275
G YTLKG T+ K GEW F
Sbjct: 305 GCDYTLKGELTYGKIGEWRF 324
>05_03_0007 -
7318113-7318292,7319984-7320046,7320138-7320304,
7320387-7320427,7320617-7320702,7321384-7321502,
7321609-7321783
Length = 276
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 145 RTMSVAILSLPVPAPKKRLSLHAYS 71
RT S + SLP+P P RLS AY+
Sbjct: 17 RTFSKPLPSLPIPLPALRLSSSAYA 41
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 6 RFSHRLKFCWSHLSHV 53
RF HR+ CWS+ SH+
Sbjct: 431 RFQHRICLCWSYGSHI 446
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 4 RGFPIASNFVGRIYRMSHYSRSRSKREAKVAFWGPEQATT 123
+G P+A+ +GR+ RM H++ + K K W +Q T
Sbjct: 400 KGSPLAAKTLGRLLRMDHHT-THWKNVQKSELWELKQEET 438
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 170 SLFIHSLDANYERRHIVVACSGPQ 99
SLF+H+ DA + ++ AC+ P+
Sbjct: 1119 SLFLHTADATNREKELMKACTDPE 1142
>02_03_0229 + 16617371-16617970
Length = 199
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 120 RCLFRPPKSDFRFTLTP*PAVMRHAIDATNKI*GDGKTSC 1
R R P S R T T P V HAI ATN G + SC
Sbjct: 48 RLHLRTPSSPPRPTPTDDPVVTLHAICATNADVGGLRLSC 87
>11_06_0368 + 22756988-22758205
Length = 405
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 26 ILLVASIACRITAGHGVSVKRKSLFGGRN 112
+LLVA + CR+ G G +R+ GGRN
Sbjct: 104 VLLVALLVCRLMRGRGRRGRRRR--GGRN 130
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 49 MSHYSRSRSKREAKVAFWGPEQATTIWR 132
+S YS S S + AKV + P+QA+ + R
Sbjct: 31 LSTYSSSSSNQTAKVPYCQPDQASALLR 58
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 244 PSHNKGCYC*RKSTPLASGTSSFPSRCRRILAINSC 351
P HNKGC+C RKS L F + IL +C
Sbjct: 183 PKHNKGCHC-RKSECLKKYCECFQA---NILCSKNC 214
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 193 FAFISKSRLYLYTHWMRTMSVAILSLPVPAP 101
F+++ +RLYLY + M V+ ++P+P P
Sbjct: 179 FSYLVSTRLYLYALPLDCMVVSKGNIPIPNP 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,232,367
Number of Sequences: 37544
Number of extensions: 245446
Number of successful extensions: 660
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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