Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O14
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   3.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 73  SVTGCNATCDRCDQQNLRRW 14
           S +  N T  +CD QN RR+
Sbjct: 662 SYSSNNKTLCKCDAQNCRRY 681


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 214 YALWFRVQCTPSHNKGCYC*RKSTPLASGTSS 309
           Y+ WF +Q   +H K      K   +AS  SS
Sbjct: 234 YSYWFIIQAVAAHEKNMREQAKKMNVASLRSS 265


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 214 YALWFRVQCTPSHNKGCYC*RKSTPLASGTSS 309
           Y+ WF +Q   +H K      K   +AS  SS
Sbjct: 110 YSYWFIIQAVAAHEKNMREQAKKMNVASLRSS 141


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 427 EIDISQLITPSTVRKSF 377
           +++ISQ+  PS+  KS+
Sbjct: 190 QVEISQMTEPSSSTKSY 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,903
Number of Sequences: 438
Number of extensions: 2640
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)