Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O13
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    30   0.21 
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   2.6  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    26   2.6  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   2.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   2.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   2.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   2.6  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   3.4  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   4.5  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.9  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 249 TKSIISMLKASLLKIILRILYHRSLLVECTPHSLVLIV 362
           +K +  M +      I+R+L  R+ LVE  PHSL+L V
Sbjct: 345 SKEVNGMNRLKARSKIVRLLQQRNRLVEQVPHSLILSV 382


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 464 IKKPSKSPQLCHEKLNVDILLLGS*KSHFKYIA*YDENQRMRCTLNKQ 321
           +  P   P+L  E L+ D+LL GS K     +    EN  + C+L  Q
Sbjct: 665 LSTPDNEPRLRKESLSSDVLLDGSEKPAQAELTINSENFPVDCSLPVQ 712


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 473 YCPIKKPSKSPQLCHEKLNVDILLLG 396
           + P+K  SKSP   HE    DIL LG
Sbjct: 406 FSPLKNSSKSPNDNHETCVNDILSLG 431


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 22  FLMKMTTVWWVMTLPL 69
           F  K T  WW MT PL
Sbjct: 302 FRHKFTVAWWAMTFPL 317


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 22  FLMKMTTVWWVMTLPL 69
           F  K T  WW MT PL
Sbjct: 302 FRHKFTVAWWAMTFPL 317


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 22  FLMKMTTVWWVMTLPL 69
           F  K T  WW MT PL
Sbjct: 302 FRHKFTVAWWAMTFPL 317


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 22  FLMKMTTVWWVMTLPL 69
           F  K T  WW MT PL
Sbjct: 302 FRHKFTVAWWAMTFPL 317


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 6   REPTQVPYEDDDGM-VGDDPAAYLSNE 83
           R+P  +P ED+DG+ + D+  A  SNE
Sbjct: 570 RQPRLIPPEDEDGVPIFDEDRAASSNE 596


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 243 KSTKSIISMLKASLLKIILRILYHRSLLVECTPHSLVL 356
           K  K++ S+L+   L+  L +LY RS   +   ++LVL
Sbjct: 79  KLAKNVSSLLQKESLEKALHLLYERSNAKKTVAYNLVL 116


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 192 SPTRWSHLSRFFH*LDMKSTKSIISMLKASLLKIILRILYHRSLLVECTPHSLVLIVLRN 371
           +PT +S+  + F+   + +    IS     L K +   +   SL+   TP+ LV    +N
Sbjct: 657 APTEFSYPEKHFY-FAVDNFNVFISKEVVRLFKTLYETIAS-SLVTPVTPNKLVTSDYKN 714

Query: 372 VFKMR 386
           V K+R
Sbjct: 715 VLKIR 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,902
Number of Sequences: 5004
Number of extensions: 32157
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)