Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O12
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 29 0.25
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 0.77
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 0.77
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 27 1.3
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 1.8
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 27 1.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 2.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 2.3
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 2.3
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 26 2.3
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 26 3.1
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo... 25 5.4
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 5.4
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 25 5.4
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 5.4
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.2
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 24 9.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 24 9.5
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 24 9.5
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 29.5 bits (63), Expect = 0.25
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 AGRKRLSSLQKELEERRLTSLRKKGVGRKKTIKLAEEAGRKKTAIAEE*RILQPPKKE-D 211
A RK+L +K ++ TSL+ K + K K + +A +KT IAE +++ K+
Sbjct: 111 AQRKKLQKERKAMKPFADTSLKAKSLWDKLRQKTSIKAEERKTIIAELFDLIRTNVKQLV 170
Query: 212 CNHRRKKIIYWCV 250
H +++ CV
Sbjct: 171 FKHDMSRVVQTCV 183
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 0.77
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 348 KKNTTKELEERRLSSPRKKELENRGLSNLRKGER 449
K+ T KE+E+ + + KKE++ R L ++ E+
Sbjct: 288 KRYTRKEMEQMKRRTKEKKEMKRRALYDIASDEK 321
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 27.9 bits (59), Expect = 0.77
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 44 KRLSSLQKELEERRLTSLRKKGVGRKKTIKLAEEAGRKKTAIAEE*RILQPPKKEDCNHR 223
K S+LQK +E ++ + + G R+K + E K + ++ R+ + K E+ +
Sbjct: 5 KAQSALQKLIESQKNPNANEDGYFRRKRLAKKERPFEPKKLVQQQQRLKEKKKNENIIYL 64
Query: 224 RK 229
+K
Sbjct: 65 KK 66
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 302 KKERSLTSKKKPACREEKYYQGAGRKKTI 388
KK+ KKKP C E + G GR+ +
Sbjct: 82 KKKPKCCEKKKPKCCESEQNNGCGRRNQL 110
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 265 YNHLANTPINNFFPSVVAVFFLRWLQ-YSSF 176
YN +A N F+ SVV F L W Q Y++F
Sbjct: 1063 YNRVAEMVNNFFYKSVVWTFTLFWYQIYNNF 1093
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 166 NRRRMKNTATTEERRLQPPKEKNYLLVCWPNDCTAAVSCEVYG 294
N RM T RRL NY+ +PND A +SCE G
Sbjct: 28 NSARMVELRETS-RRLFYHGYNNYMQFAFPNDELAPLSCEGLG 69
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 2.3
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Frame = +2
Query: 65 KELEERRLTSLRKKGVGR--KKTIKLAEEAGRKK---TAIAEE--*RILQPPKKEDCNHR 223
K +ER L +R+K R KK +KLA+E R++ +AE+ + L+ ++E+ +
Sbjct: 581 KRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKK 640
Query: 224 RKKIIYWCVGQMIVLLQFLVKSTGASKKERSLTSKKKPACREEKYYQGAGRKKTIKPAEE 403
R++ Q + Q + +K +K+ + +K Q A R+K +
Sbjct: 641 REE-------QRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRL 693
Query: 404 GAGEQRTIKPAERRKD 451
E++ I +R++
Sbjct: 694 REEEEKRILEERKRRE 709
Score = 25.4 bits (53), Expect = 4.1
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Frame = +2
Query: 62 QKELEERRLTSLRKKGVGRKKTIKLAEEAGRKKTAIA------EE*RILQPPK------K 205
Q+ELE ++ +K+ KK K +EA R+K A EE RIL+ K K
Sbjct: 654 QQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDK 713
Query: 206 EDCNHRRKKII 238
E+ RR++++
Sbjct: 714 EEEERRRRELL 724
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 50 LSSLQKELEERRLTSLRKKGVGRKKTIKLAEEAGRKKTAIAEE*RILQPPKKE 208
L++ ++ELE+ R S + +G + I EE RKK E R+ KE
Sbjct: 1469 LNTTKEELEKVRQNSNKSEGTSKDTEIPNEEEMERKKVMQQEVLRLRSRIAKE 1521
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 156 FLPASSASLIVFFLPTPFFRKLVSLLSSSSFCRLDSLFLPA 34
FL + I +++P P+ ++ + + FCR D + PA
Sbjct: 14 FLAFTGLLAIQYYVPNPYLDEIFHIAQAQRFCRKDWDWDPA 54
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 154 KEDCNRRRMKNTATTEERRLQPPKEKNYLLVCWPNDCTAAVSCEVY 291
++ RR+++ EER+L P + K D A + C V+
Sbjct: 358 RKQVEERRLRHERENEERKLTPEERKEKAFRKKDEDSAAGLRCLVF 403
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 268 AAVSCEVYGSVEERKIAYLEKKTSMSRRKILPRSWKKEDYQARGRRSWRTEDYQTCGKE 444
A EV +EE + KK + K+LP S + Y R + TED+++ K+
Sbjct: 131 APAKTEVVRQLEEEAV----KKAARQSNKMLPLSAFEHAYIQRLINKYGTEDFESMAKD 185
>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 165 QSPKNEEYCNHRRKKTATTEGKKLFIGVLAK 257
Q + E + +RKK ++ E KKL + V+ K
Sbjct: 59 QGDRKESVASKKRKKLSSKEKKKLQLNVVPK 89
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 41 RKRLSSLQKELEERRLTSLRKKGVGRKKT 127
+ R QKE EE+R+ +L+ G G K T
Sbjct: 111 KNRTQEAQKEKEEKRIVTLQNDG-GSKNT 138
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 79 KKTNKLAEKRSWKKED 126
K+T ++A +RSW KE+
Sbjct: 397 KRTRRVANRRSWTKEE 412
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 221 RRKKIIYWCVGQMIVLLQFLVKSTGASKKERSLTSKKKPACREE 352
R+K+I Q + Q L T ++++ +LT K+K REE
Sbjct: 433 RKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREE 476
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 7.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 16 QDCGRRSWKKKTIKSAEGAGRKKTNKLAEKRSWKKED 126
+D G + KK SA G GR KTNK + +D
Sbjct: 1331 EDAGSKKPVKKIAASASGRGR-KTNKPVATTIFSSDD 1366
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = +1
Query: 250 WPNDCTAAVSCEVYGSVEERKIAYLEKKTSMSRRKILPRSWKKEDYQARG---RRSWRT 417
WP V + G V+ AYL K + + R+W ED G R W T
Sbjct: 27 WPKS-QDKVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDSAPSGCPAERDWAT 84
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 2 HEGVFKIAGEGAGRKRLSSLQKELEERRLTSLRKKGVGRKKTIKLAE 142
H I + RKR + ++KE+ + RL +K +KK K E
Sbjct: 352 HVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERK---KKKLAKYTE 395
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 284 KSTGASKKERSLTSKKKPACREEKYYQGAGRKKTIKPAEE 403
K+ A +++ KKK A +EK+ +G K + AE+
Sbjct: 10 KAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEK 49
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 24.2 bits (50), Expect = 9.5
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +1
Query: 124 DY*ACGRSWK---KEDCNRRRMKNTATTEERRLQPPKEKNYLLVC 249
D A R W+ K+DC R T T EE+ Q K L C
Sbjct: 714 DQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSC 758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,030
Number of Sequences: 5004
Number of extensions: 34516
Number of successful extensions: 164
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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