Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O11
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   6.3  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    24   6.3  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    23   8.3  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 213 FIPIENLLQIGIDVYLNTLSIFTKKKELRQISRFLYVWLKI 91
           F  +++LLQI  D     +S F +  E +  SR+L+ WL +
Sbjct: 385 FEQVQSLLQILSDSA--AVSCFLEFMERKNRSRYLHFWLVV 423


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 138 FSW*KYLKYLNTHLCQFVIDFQL 206
           FSW  +  YL   +C+ V+D ++
Sbjct: 62  FSWGDHGDYLTVEICRIVLDVRV 84


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 243 IMHTLGKTSYFIPIENLLQIGIDVYLNTLSIFTKK 139
           I+H L K + FI    +  + +D  LNT+ I   K
Sbjct: 8   IIHFLRKRAIFIVAAFIALLTVDYSLNTIEITDSK 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,828
Number of Sequences: 5004
Number of extensions: 19636
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)