Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O09
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 110 1e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 53 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 44 1e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 36 0.004
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 35 0.008
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 34 0.014
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.39
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 27 1.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.6
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 2.1
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 3.6
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 6.3
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 8.4
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 110 bits (264), Expect = 1e-25
Identities = 46/96 (47%), Positives = 67/96 (69%)
Frame = +1
Query: 211 GQNMRRPNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFE 390
G N+ + +W + +L PF KDFY H++V +RS EV +YR + E+ V G+ VP P+ FE
Sbjct: 66 GANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFE 125
Query: 391 EANFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGKN 498
EA FP+YV + +K +G + PTPIQ Q WP+AMSG++
Sbjct: 126 EAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 53.2 bits (122), Expect = 2e-08
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +1
Query: 244 LSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHE-VTVSGVEVPNPIEHFEEANFPDYVCQ 420
++ + F KDFY + + + SP EV++ R + + + G++ P P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 421 AIKSMGNKDPTPIQAQGWPIAMSGKN 498
I S+G + PT IQAQ P SG++
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRD 457
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.0 bits (99), Expect = 1e-05
Identities = 15/57 (26%), Positives = 34/57 (59%)
Frame = +1
Query: 328 RNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGKN 498
+ + +++ G ++PNP+ ++EEA P + + +K + K+P+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 35.5 bits (78), Expect = 0.004
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 343 VTVSGVEVPNPIEHFEEANFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGKN 498
V VSG ++ P+ F ++ Q IK G PTP+Q PI SG++
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRD 208
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 34.7 bits (76), Expect = 0.008
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 385 FEEANFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGKN 498
F+E D +C+A + +G K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 33.9 bits (74), Expect = 0.014
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 325 YRNKHEVTVSGVEVPN---PIEHFEEANFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGK 495
Y KH ++ + + PI F+E + + + +K+ K+PTPIQA WP ++G+
Sbjct: 146 YIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGR 203
Query: 496 N 498
+
Sbjct: 204 D 204
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 29.1 bits (62), Expect = 0.39
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = -1
Query: 426 YCLTHIIWKVCLFKMFNRIRYFNSTNSDFVFVSIVLYFIW 307
+ ++++I + L ++F+ +R+ N+ ++F SIV + W
Sbjct: 856 WAVSNLILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAW 895
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 385 FEEANFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGKN 498
FE+ + I G + P+PIQ + PIA+SG++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRD 83
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 307 PYEVEDYRNKHEVTVSGVE-VPNPI 378
PYE++ YRNKH +S + +PN +
Sbjct: 253 PYEIQVYRNKHWFPISTEDLLPNDV 277
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 2.1
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +1
Query: 229 PNWDSLSLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNPI----EHFEEA 396
P++ ++S Q FN D + S + E+ K+ G + + + F+
Sbjct: 209 PSFANISTQDFNSD----SAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSM 264
Query: 397 NFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGKN 498
N + + + ++G + PT IQ + P+A+ GK+
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 355 GVEVPNPIEHFEEANFPDYVCQAIKSMGNKDPTPIQAQGWPIAMSGKN 498
G+ + + F + N + +AI + PT +Q++ P+A+ GK+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKD 53
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 286 KSVLDRSPYEVEDYRNKHEVTVSGVEVPNPIEHFEEANFPDYVCQAIKSM 435
+ D P +DYR+ +T S + N + +E + Y+CQ + S+
Sbjct: 919 REAFDGRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSI 968
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 247 SLQPFNKDFYNPHKSVLDRSPYEVEDYRNKHEVTVSGVEVPNP 375
S+ +NKD N K RS ++ + K + S VE+ P
Sbjct: 744 SVNDYNKDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEP 786
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 269 SLLNGWSDSESQLGRRIFCPP 207
+++ WSD S L R++C P
Sbjct: 76 TIIQSWSDKVSVLPNRLYCLP 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,469
Number of Sequences: 5004
Number of extensions: 34822
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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