Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O07
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 144 1e-35
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 122 3e-29
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 37 0.002
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 33 0.020
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 33 0.027
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 31 0.11
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.1
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 26 3.1
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.1
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 26 4.1
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 25 5.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.2
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 7.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.5
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 144 bits (348), Expect = 1e-35
Identities = 72/142 (50%), Positives = 99/142 (69%), Gaps = 3/142 (2%)
Frame = +3
Query: 9 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFE--SENENRMEESKALFKTIITYP 182
DVGGQR+ERRKWI+CFENV SIIF V+L++YD+ L+E + NR+ ES +LF +II
Sbjct: 198 DVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLFDSIINSQ 257
Query: 183 WFQHSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDANAAREFILRMFVDLNPD-AE 359
WF HSS+ILFLNK DL +K+ + DYFP+Y+G + + +IL +FV+ + + A+
Sbjct: 258 WFMHSSIILFLNKFDLFRKKLEHVPFQDYFPQYEG-KNSVKSITRYILWLFVNPSINRAK 316
Query: 360 KIIYSHFTCATDTENIRFVFAA 425
IY H T A DT NI+ VF+A
Sbjct: 317 HNIYPHITTAVDTSNIKVVFSA 338
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 122 bits (295), Expect = 3e-29
Identities = 68/154 (44%), Positives = 91/154 (59%), Gaps = 15/154 (9%)
Frame = +3
Query: 9 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWF 188
DVGGQRSERRKWIHCFENVT+++FLV+L+ YDQ L E + N+M+E+ L+ +I WF
Sbjct: 240 DVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQMQEALLLWDSICNSSWF 299
Query: 189 QHSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG------------PQRDANAARE---FI 323
S++ILFLNK DL + K+ S + +FP+Y P D NA R +
Sbjct: 300 SESAMILFLNKLDLFKRKVHISPIQKHFPDYQEVGSTPTFVQTQCPLAD-NAVRSGMYYF 358
Query: 324 LRMFVDLNPDAEKIIYSHFTCATDTENIRFVFAA 425
F LN A + Y HFT ATDT ++ V +
Sbjct: 359 YLKFESLNRIASRSCYCHFTTATDTSLLQRVMVS 392
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +3
Query: 9 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWF 188
DVGGQ R W H F+N IIF+V +S + R+ E+ + ++
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGIIFVV----------DSNDRERISEAHEELQRMLNEDEL 116
Query: 189 QHSSVILFLNKKDL 230
+ + +++F NK+DL
Sbjct: 117 RDALLLVFANKQDL 130
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 33.5 bits (73), Expect = 0.020
Identities = 19/74 (25%), Positives = 40/74 (54%)
Frame = +3
Query: 9 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWF 188
D+GGQ++ R W + FE+ +II++V +S ++ R+EE + + ++
Sbjct: 66 DIGGQKTLRNFWKNYFESTEAIIWVV----------DSLDDLRLEECRNTLQELLVEEKL 115
Query: 189 QHSSVILFLNKKDL 230
+S+++ NK D+
Sbjct: 116 LFTSILVLANKSDV 129
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 33.1 bits (72), Expect = 0.027
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 9 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWF 188
DVGGQ R W H F +IF+V +S + NR+ E++ II+
Sbjct: 71 DVGGQDKIRPLWRHYFTGTKGLIFVV----------DSADSNRISEARQELHRIISDREM 120
Query: 189 QHSSVILFLNKKDL 230
+ +++ NK+DL
Sbjct: 121 RDCLLLVLANKQDL 134
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 9 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQILFESENE 131
D+GG + RR W F V I++LV ++++ L ES+ E
Sbjct: 70 DLGGHQQARRLWRDYFPEVNGIVYLVDCCDFER-LSESKAE 109
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 45 IHC-FENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPW 185
IH FE++ S + LV + Y ++L ++ +E +E LFK I + P+
Sbjct: 710 IHAKFESLHSRVELVVKNSYMKLLEQTISEAATDEISDLFKLIHSKPF 757
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 333 FVDLNPDAEKIIYSHFTC 386
F LNPDA IYS+F C
Sbjct: 330 FPTLNPDAYIYIYSYFLC 347
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 405 IRFVFAAGEGHNPTVQPKRVQPRLREKKKSTWS 503
+R++FA H +Q R ++E+++ WS
Sbjct: 61 LRYIFALNSRHPEKLQKLRKMKAMQERQERNWS 93
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/74 (18%), Positives = 36/74 (48%)
Frame = +3
Query: 42 WIHCFENVTSIIFLVALSEYDQILFESENENRMEESKALFKTIITYPWFQHSSVILFLNK 221
+I CFE+ T+I ++ L E+ ++ + + K L + + Y Q + +++K
Sbjct: 103 FIDCFEDSTNIYLILELCEHKSLM------ELLRKRKQLTEPEVRYLMMQILGALKYMHK 156
Query: 222 KDLLEEKIMYSHLV 263
K ++ + +++
Sbjct: 157 KRVIHRDLKLGNIM 170
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 230 ARREDNVFPSRRLLSRIRRAPTGRECGSRIHSTYVRRSQS 349
+++ +NVFP+R L+ ++ G + G HS R+S++
Sbjct: 3 SKQRENVFPTRMTLTTMKTRLKGAQTG---HSLLKRKSEA 39
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 7.2
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 250 IPISSITFQNTTGPNGTRMRLANSFYVCSSISIRMLRKSSTLTLPVRQTLKISGSCSPL 426
+P SS++ + N T A+S + S S SST V T S S +PL
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPL 473
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 289 PNGTRMRLANSFYVCSSISIRMLRKSSTLTLPVRQTLKISGSCSPLVKDTILQS 450
P+ +R S + SIS+ + +S+ ++LP+ S + SP T+L S
Sbjct: 136 PSLSRRNSKKSSTLSRSISLHLRSESAPISLPIHLYKSYSYNHSPSSLPTVLNS 189
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 132 NRMEESKALFKTIITYPWFQHSSVILFLNKKDLLEEKIMYSHLVDY 269
+R +ES + +I PW + I ++ LE K + +HL ++
Sbjct: 2092 SRQKESTPI-NDVILPPWAKGDPAIFVQKNREALESKYVSAHLHEW 2136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,557
Number of Sequences: 5004
Number of extensions: 42379
Number of successful extensions: 120
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -