Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O05
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 169 2e-43
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 168 5e-43
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.077
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 31 0.077
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.41
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 1.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 3.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 5.0
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 25 6.7
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.7
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 8.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 8.8
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 169 bits (412), Expect = 2e-43
Identities = 84/133 (63%), Positives = 103/133 (77%), Gaps = 2/133 (1%)
Frame = +2
Query: 119 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 298
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 299 WRVISSIEQKTE--GSERKQQMAKEYRVNVEKELREICYDVLCLLDKHLIPKASNPESKV 472
WR+ISSIEQK E G+ R+ + KEYR +E EL +IC+DVL +L+KHLIP A+ ESKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 473 FYLKMKGDYYRYL 511
FY KMKGDYYRYL
Sbjct: 121 FYYKMKGDYYRYL 133
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 168 bits (408), Expect = 5e-43
Identities = 81/132 (61%), Positives = 101/132 (76%), Gaps = 2/132 (1%)
Frame = +2
Query: 122 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 301
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 302 RVISSIEQKTE--GSERKQQMAKEYRVNVEKELREICYDVLCLLDKHLIPKASNPESKVF 475
R++SSIEQK E G+ + ++ KEYR +E+EL IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 476 YLKMKGDYYRYL 511
Y KMKGDYYRYL
Sbjct: 123 YYKMKGDYYRYL 134
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.077
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 122 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 292
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 293 SSWRVIS 313
S+W S
Sbjct: 62 STWATFS 68
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 31.5 bits (68), Expect = 0.077
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Frame = +2
Query: 113 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARR 292
S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 3004 SDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAE 3062
Query: 293 SSWRVISSIEQKTEGSERKQQMAKEYRVNVEKELREIC--YDVLCL 424
+R+ + +E+ + EY +E+ L++ C Y+ C+
Sbjct: 3063 LFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKECKAYERSCI 3108
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.1 bits (62), Expect = 0.41
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 128 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 307
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 308 ISSIEQKTEGSE---RKQQMAKEYRVNVEKELR 397
S E + E SE R+Q++ +E R EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 442 YKVLVQ*TQDIIADFSELLFYVNPIFFCHLL 350
+ L Q ++++I +EL F+ F CHLL
Sbjct: 1755 FHALSQPSRELICKMTELNFFAADFFLCHLL 1785
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 257 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVNVEKE 391
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 5.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 413 VLCLLDKHLIPKASN-PESKVFYLKMKGD--YYRYL 511
VL L+ L+ A+ PE K+FY K GD Y +YL
Sbjct: 509 VLMQLESFLLNIANPAPEGKLFYEKQTGDNPYLKYL 544
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 246 ETFFPLLIKMWSAPDGHHGESFPLLNRKP 332
E F P L++ +A D +GE+ LL R+P
Sbjct: 104 EVFLPQLLRYPNASDPLNGEAAALLLREP 132
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 508 IPVVISLHFEVKYFT-FWIT 452
+P++I LHF K FT W+T
Sbjct: 62 LPILIRLHFYKKLFTILWLT 81
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 8.8
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 291 GHHGESFPLLNRKPKGRKENNRWQKNIGLT*KRSSEKSAMMSCVYWTSTLYLKLVIQKVK 470
G + SF L+ ++ K K+ W+ I KR + + +S ++ T+ +V K+K
Sbjct: 591 GKNNCSFQLVKKRIKSTKKAPSWRSIIKAFKKRENTRCNFLSSLHATTFREDIVVRPKIK 650
Query: 471 YF 476
F
Sbjct: 651 SF 652
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 410 DVLCLLDKHLIPKASNPESKVFY 478
DV+C + L+P PE K+FY
Sbjct: 178 DVICGKEAFLLPLNEYPEYKLFY 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,989
Number of Sequences: 5004
Number of extensions: 40379
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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