Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O04
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   1.0  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   1.0  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    25   4.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    23   9.6  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 146 TGRE*SSPICLLLNNDHVNNIH 211
           TG+    P+ L +NN HV+++H
Sbjct: 15  TGKTYIQPVGLFINNQHVDSVH 36


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 233 IISNRKISEYYLRDHYSTISKWDWTI 156
           ++S    S+Y    HY  + +W WT+
Sbjct: 142 LVSPEPPSDYSFGVHYKNVERWAWTL 167


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +3

Query: 165 VPFAYCXXXXXXXXFTYFSVRNYLNANIIT*GDKSFPYYCLDP*VGEGSGSGRW 326
           +P  +         + YF  + Y++   +  G+ +F  YC    +  G G+GR+
Sbjct: 92  IPAPHYFGSEETFLWKYFPPKKYVHYPFV--GNSNFVAYCTKSFLAFGGGNGRY 143


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 281 IVRKALIASRDYVSI*IISNRKISEYYLRDHYSTISKWDWTIPAPSLTV 135
           IV K +      V++ ++S  + S + L     T+ KW + I   SLT+
Sbjct: 12  IVSKVIFFVLRSVTLSLVSVTRFSLFLLSFATITVPKWAYKIVTYSLTI 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,549
Number of Sequences: 5004
Number of extensions: 21657
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)